PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr040860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 37053.7 Da PI: 7.583 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed +l d++++ G g+W++ ++ g++R++k+c++rw +yl Pbr040860.1 15 KGPWTMDEDAKLMDYIRRNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 1.9e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ +++++ lG++ W++Ia +++ gRt++++k++w+++l Pbr040860.1 68 RGKFSEEEERVIINLHSVLGNK-WSKIATHLP-GRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.85 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.25E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.91E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.848 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-12 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MVRSPCCDEE NSLKKGPWTM DEDAKLMDYI RRNGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEEEERVII NLHSVLGNKW SKIATHLPGR TDNEIKNYWN THLRKKLLHM 120 GIDPNTHKPR TDLNHLLDLS WLLRAASVGN SNMMTGPWDN AMSLQAAAGA AQLAKMQLLQ 180 CLYMMPVVST SNSSVPPKNY NADVMNTTTN SHFGSQSLHL FGGGNMSGAS TILSGQKWNQ 240 QADKVDGFHA ISNLFEGFQG GFGAQGGINS NSTDQENMSS SCYGDIYVQT SNQPPPAFSS 300 AALSPGTSST AIFDVWEKLM DDEASESYWK DILE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-30 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr040860.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346399.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
TrEMBL | A0A498JPH9 | 0.0 | A0A498JPH9_MALDO; Uncharacterized protein | ||||
STRING | XP_009346399.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-78 | myb domain protein 9 |