PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040636.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 275aa    MW: 30923.3 Da    PI: 6.1471
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040636.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-1955108356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++++eq+++Le+ F  ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  Pbr040636.1  55 KKRRLNSEQVKALERNFDVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 108
                  456899***********************************************9 PP
2HD-ZIP_I/II128.33.3e-4155146293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrl++eqvk+LE++F+ e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk+ yd lk + ++Le+++++L+e+l++
  Pbr040636.1  55 KKRRLNSEQVKALERNFDVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYSILKTDYDGLKLNFDSLERQNKALAEKLSQ 146
                  9**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-1948112IPR009057Homeodomain-like
PROSITE profilePS5007117.39450110IPR001356Homeobox domain
SMARTSM003893.1E-1753114IPR001356Homeobox domain
CDDcd000863.12E-1555111No hitNo description
PfamPF000461.5E-1655108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-2057117IPR009057Homeodomain-like
PRINTSPR000317.4E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000317.4E-690106IPR000047Helix-turn-helix motif
PfamPF021833.7E-14110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKRISSSDSV GALVSNFPSK AEGKLAKDSY GYSKELQAML DSLNQEDVGE EMSGKKRRLN  60
SEQVKALERN FDVENKLEPE RKVKLAEELG LQPRQVAIWF QNRRARWKTK QLERDYSILK  120
TDYDGLKLNF DSLERQNKAL AEKLSQLKAK LYGESAQRND SVKEESPIST CKSSENLEVD  180
LIKNLKSKDG SSDSDSNGVL TKEESNGNSS LGFNNNRNSI SSNSMVNWFQ LSDSRSVGGK  240
GFQAQTVRME EQSFFSTDES CNFFSVDQAP SLHW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040636.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373197.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A498HWK91e-176A0A498HWK9_MALDO; Uncharacterized protein
STRINGXP_009373197.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-57homeobox protein 16