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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pbr040536.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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| Family |
SRS |
| Protein Properties |
Length: 357aa MW: 38801.8 Da PI: 7.241 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr040536.1 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 213.8 | 4.1e-66 | 115 | 277 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrel...........kskkqsa 85
g+asCqdCGnqakkdC h+RCRtCCk+rg++C thvkstWvpa+krrerqqqlaa+++++ +++ + + ++++ + ++ s+
Pbr040536.1 115 GGASCQDCGNQAKKDCIHMRCRTCCKNRGLHCPTHVKSTWVPASKRRERQQQLAALQHQHHQHQghiqqH--HDQQQQ-QlqvirgesskrLRENPSS 209
779*****************************************************99988887766431..222222.1345666665554455566 PP
DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
s ++ ++++++ l++ ++P+evss+avfrcv+vs++d+ e+++aYqtav+i+Gh+fkGiLydqG+e+
Pbr040536.1 210 NPSLRILTNTNTSGLDVVNFPPEVSSPAVFRCVKVSAMDN-EDQYAYQTAVNIAGHLFKGILYDQGPES 277
6666666777777888888*******************97.579**********************985 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MAGFFSLGRG GSDDQDNSNN PPPPDHHNHH QIAPETLFWY KNEDVANQPY KGFELWQQQE 60
QLLQLQTQPP PPLYQPQSWV GPSSRGSDDT SSSRSATAGF TMMRSSSGGR GGSGGGASCQ 120
DCGNQAKKDC IHMRCRTCCK NRGLHCPTHV KSTWVPASKR RERQQQLAAL QHQHHQHQGH 180
IQQHHDQQQQ QLQVIRGESS KRLRENPSSN PSLRILTNTN TSGLDVVNFP PEVSSPAVFR 240
CVKVSAMDNE DQYAYQTAVN IAGHLFKGIL YDQGPESPNY NMNMAADTSS GGGVNFQPLN 300
LIAGAATTVN TASIDGGGGH EGVEVAGSTT VIDPSSLYPA PINTYMGTQF FLPPRS*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 107 | 115 | GGRGGSGGG |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G66350.1 | 3e-63 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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