PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr040436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 323aa MW: 35380.4 Da PI: 4.4616 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 5.9e-09 | 137 | 179 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR +++++ Lr+l+P+ +K++Ka+i+ v Y+++Lq Pbr040436.1 137 SERKRRGSMKERLYALRSLVPNI-----TKMDKASIVGDSVLYVQDLQ 179 6*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.246 | 129 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-16 | 131 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.75E-11 | 131 | 181 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-15 | 131 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-13 | 135 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 137 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034756 | Biological Process | regulation of iron ion transport | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0071732 | Biological Process | cellular response to nitric oxide | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MDSLGNHHQG GHNINDFELQ DFIDDANFDQ FIDIIRGDGE DPAANFDPDL MMNGCFDDYS 60 LFGQAGSTTP PGLMFGFNDV IVPDPTTSLF ATSPNFDGEM KGGEEEYYND GEDSSGTTTT 120 MTTTKRQKVD RSRTLVSERK RRGSMKERLY ALRSLVPNIT KMDKASIVGD SVLYVQDLQQ 180 QAKKLKAEIA SLEASLAGAD DREGHLEGST KPNKDSNYDQ FFSKGILQID VSQVEEKGFY 240 VKVACNKGGG VAISLYKALE SLTSFDVQSS NLNTVSADRF EITFALNVKK CEQDVVNLPN 300 LKLWVTGAFL NQGFKLASGF SA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Essential protein involved in iron uptake responses. Regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation. Confers enhanced iron mobilization responses at low iron supply. {ECO:0000269|PubMed:15539473, ECO:0000269|PubMed:15556641, ECO:0000269|PubMed:16117851}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr040436.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In roots by iron deficiency. Repressed by cytokinins. Induced by cold, UV, ethylene (ACC), jasmonic acid (JA), flagellin, and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15531708, ECO:0000269|PubMed:15539473, ECO:0000269|PubMed:15556641, ECO:0000269|PubMed:18397377}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009372500.1 | 0.0 | PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like | ||||
Swissprot | Q0V7X4 | 5e-99 | FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | ||||
TrEMBL | A0A1Y0DD99 | 0.0 | A0A1Y0DD99_PYRCA; FER-like iron deficiency-induced transcription factor | ||||
STRING | XP_009372500.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3679 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 4e-82 | FER-like regulator of iron uptake |