PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040384.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CPP
Protein Properties Length: 562aa    MW: 60999.5 Da    PI: 8.1525
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040384.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.61e-071111351641
          TCR  16 kYCeCfaagkkCseeCkCedCkNkee 41 
                  +YCeCfaag +C+  C+C++C+N+ +
  Pbr040384.1 111 RYCECFAAGIYCDG-CNCSNCHNNVN 135
                  7*************.********986 PP
2TCR512.9e-16181220140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Pbr040384.1 181 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 220
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.319101221IPR005172CRC domain
SMARTSM011140.0013107136IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-5111133IPR005172CRC domain
SMARTSM011148.4E-20181222IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12184219IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEQSETVSEV APKKLARQLD FTTVYRASAS AALTDVQLQL QTPSQAQQQP QISPARPQLH  60
LHLQSPQPAA VQSSKQLTPP PPIPQFQARR SPAPPANVRI PHPVHKLSQV RYCECFAAGI  120
YCDGCNCSNC HNNVNNEAAR QDARGAILER NPNAFQPKIA SSPQESRDGR EDAREIQAAG  180
KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCMDCKNFE GSEERRALYH DGHNTAAYMQ  240
QANAAISGAI GTSGYGTPLV SRKRKGYELY FTTGNQSTHP IAQPQQENHL RPHMASSSQL  300
SAPIFHAANA AVSRPSKTTT YRSPLADIIQ PKNVKDLCSR LVVVAGVAAK ALAGNMQGET  360
INTSTTSSTQ EGEEHKMEHN KQHDDQLGVN QADREASTFS GSNGGDVQNS RPMSPVTLAL  420
MCDEQDKMFM EAGLPKCAGT DDPSMPQKPA QEIGFTEIYA EQERLVLTGF RDFLNHLITR  480
GSIKETMCSP QAKTERLSQK ESVQVGTAKP NTEPGYQKEV YSNGIVKSPL SSANGKILQS  540
VTTVTSGGND LTLKVGLPTE K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-2611223025132Protein lin-54 homolog
5fd3_B1e-2611223025132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040384.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4840288e-45AM484028.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X101832.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346088.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A498J8320.0A0A498J832_MALDO; Uncharacterized protein
STRINGXP_009346088.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-106Tesmin/TSO1-like CXC domain-containing protein