PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040318.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 341aa    MW: 37243.4 Da    PI: 7.5527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040318.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000412062441255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Pbr040318.1 206 RKEKLGDRITSLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 244
                  6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.204194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-10204255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-7204252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-5204248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMAGNPNWWS SMHPPSLFPS QYVQLGSPNS LPLPDHNLEP PQSWSQLLLG GLSSQEDTFG  60
TLSHNFQPKS RLESWEEDQI LITQYPRAPL PPHGVDGIIK QEANSQNSIN LLGSSPHGDE  120
EFQLQAPSSC RPVWSPVQTM PVSSPRSCVT SLSNTNNILD FSYNKTDNKR NQHADHSSEC  180
NSTATGGTSK KARVQQSPSQ PPLKVRKEKL GDRITSLHQL VSPFGKTDTA SVLLEAIGYI  240
RFLQGQIEAL SSPYLGNASK NTRKRQSVQG GRNCVFPQDA GQLLNDNCLK SKDAPNQESQ  300
DHKAKDLRSK GLCLVPVSCT QHVGSDNGAD YWAPAYGNGF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040318.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346091.10.0PREDICTED: transcription factor bHLH68-like
RefseqXP_009377815.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D12e-73BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A498HJ180.0A0A498HJ18_MALDO; Uncharacterized protein
STRINGXP_009346091.10.0(Pyrus x bretschneideri)
STRINGXP_009377815.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.18e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]