PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr040213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | G2-like | ||||||||
Protein Properties | Length: 397aa MW: 44184.6 Da PI: 8.5613 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.6 | 5.9e-33 | 260 | 315 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Pbr040213.1 260 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 315 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.318 | 257 | 317 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-30 | 257 | 318 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.19E-18 | 257 | 318 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-27 | 260 | 315 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-8 | 262 | 313 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MGSVPPELSL DFKPTFVPKT ISDFLKEVSM IGNVSEKLSK LDDFVKRLED EMRKIDAFKR 60 ELPLCMFLLN DAIRALKEDA MQCAAPKVQP VLEEFIPMKK DCDKNKGGSG NNNKKEKDSR 120 DKKNWMSSVQ LWNTDNFHQH PSGDSPYDRK RVSEIDSKRN EAENGVANED PFQTCRNRTG 180 GRAFMPFKGY PAFSVTPLRL EEKEELPVHG LSLLTPGIKN PKEESTSSGS RSTCGRSVSF 240 STANTQSNMR TPPQQPTSRK QRRCWSPELH RRFVNALQQL GGSQVATPKQ IRELMQVDGL 300 TNDEVKSHLQ KYRLHTRRVP GAAAAGSEKQ SVGLGALWMS QDQYVDSSKA GSSQSGSPQG 360 PLQLTGTGGD DEDDEDAKSE SYSWKGYIHK PGKDDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-14 | 260 | 313 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-14 | 260 | 313 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-14 | 260 | 313 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-14 | 260 | 313 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-14 | 260 | 313 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-14 | 260 | 313 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-14 | 260 | 313 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-14 | 260 | 313 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-14 | 260 | 313 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-14 | 260 | 313 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-14 | 260 | 313 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-14 | 260 | 313 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr040213.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009345969.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like | ||||
Refseq | XP_009345970.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like | ||||
TrEMBL | A0A498JX67 | 0.0 | A0A498JX67_MALDO; Uncharacterized protein | ||||
STRING | XP_009345969.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009345970.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-56 | G2-like family protein |