PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040108.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 90aa    MW: 10167.9 Da    PI: 10.5686
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040108.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34.1e-281059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye++s
  Pbr040108.1 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEFAS 59
                 8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.272161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-29270IPR002100Transcription factor, MADS-box
CDDcd002655.50E-37281No hitNo description
PRINTSPR004047.2E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TGKLYEFASN  60
RTTLKEEIQI WKYKNNIGAD LEIYITMQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19159159MEF2C
5f28_B3e-19159159MEF2C
5f28_C3e-19159159MEF2C
5f28_D3e-19159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040108.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390636.27e-35MADS-box transcription factor 23-like
SwissprotQ9SZJ63e-33AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A498KJN02e-33A0A498KJN0_MALDO; Uncharacterized protein
STRINGXP_009345856.14e-34(Pyrus x bretschneideri)
STRINGAES983161e-34(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-35AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]