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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr040068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRF | ||||||||
Protein Properties | Length: 528aa MW: 56722 Da PI: 7.1353 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.4 | 1.4e-24 | 142 | 185 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e Pbr040068.1 142 DPEPGRCKRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKHVE 185 79****************************************98 PP | |||||||
2 | QLQ | 56 | 1.2e-19 | 81 | 114 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT+aQ+ +L++Q+++yKy++a++PvP +Ll+++ Pbr040068.1 81 PFTNAQWKELERQAMIYKYMVASLPVPRDLLFPL 114 8******************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.0E-10 | 80 | 116 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.723 | 81 | 116 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-13 | 81 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.586 | 142 | 186 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-20 | 143 | 185 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MMMVHHDNHR RPFPSSDTTP VPDAGGPTCN RPPPTYDDVV AAGTGTGSSS GGGAVLRNLQ 60 PFDIRTNTRS AGGMTTSFGF PFTNAQWKEL ERQAMIYKYM VASLPVPRDL LFPLTTTPPG 120 TTAASQSPLG GRFNLRLSNS TDPEPGRCKR TDGKKWRCSR DVAPDQKYCE RHMHRGRPRS 180 RKHVEVHATA ASKRVRHDIN LAPPLPTVSP ETVSISNPAN GINKNVCSSQ FMGSNLHPYH 240 PSPVFPERDS AKFASFESMN SASANREPRN LDWLVMKGEP VSDAQWHQLM HSKTELSTKI 300 PFFDPNSSVF SNRSEEESFL NLNSFTNFSA GEDQQDGGEC NLFLNPDVAP LESPLLEETP 360 RYFIDAWSKT VTDEETMAAN SVNNNDNSSA PSSGQLSPSS LTLSMGGYNS INEEMGQTQM 420 SLGTSGNGMM PRGSTWPASW VASAPGGPLA EVLKPTTSAA SNPSSPVTTG TTTNGELGSP 480 LAVSSPSGVL QKKFVSPSDS SGNSSPTLAS SKAKPENVSL WLNQSKA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr040068.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009361294.1 | 0.0 | PREDICTED: growth-regulating factor 6 | ||||
TrEMBL | A0A498JIB1 | 0.0 | A0A498JIB1_MALDO; Uncharacterized protein | ||||
STRING | XP_009361294.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 3e-35 | growth-regulating factor 7 |