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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr039901.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 604aa MW: 63387.4 Da PI: 8.856 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.5 | 8e-41 | 195 | 321 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ + s +ss+s+ s + Pbr039901.1 195 PVAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNISLRSSGSSLSFPpsksaphsfh 292 5789*****************************************************************99987777777777444445555667777 PP TCP 89 ........................kaaksaakskksqksa 104 + q ++ Pbr039901.1 293 galalahhphydegcahsglmgfhQ-----------QLQQ 321 7777777777776655443333221...........2222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-39 | 200 | 333 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.023 | 201 | 255 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MDLSNFQPNN NKKQQQQQQQ NNNTSTSTSN NTTTSLHHHH LLPHLQQKFQ HHHQQQHPSS 60 SSSYSSSFVG PFDGIRSSSG GGGGGGGPRS MSSISIQAGL TATSQSTPPP PTTSAPSSSS 120 FSSSSSTSSP SSTSTSTAPP QLVDASLAMA TRSDPHPPTR PGSLLDSAKN NQIQQQLTIS 180 PATTPPPAAA ATTTPVAKRS TKDRHTKVEG RGRRIRMPAT CAARVFQLTR ELGHKSDGET 240 IEWLLQQAEP SIIAATGTGT IPANFSTLNI SLRSSGSSLS FPPSKSAPHS FHGALALAHH 300 PHYDEGCAHS GLMGFHQQLQ QQQHPQHHHQ PHQSPLMTAD QIAEALPSGG RDSGGGGGGE 360 STENYMRKRF REDLFKDDNQ ERGESGSGGG GGSPSRNKAF KGGSSCGLQL PKQQQQGAEL 420 GSYSSGVLRP SNILPATAMW AVAPAPTSGA GSTFWMLPVT AGSAVPSMAT GTSGAGPSEA 480 AQMWTFPSAT ASHVSTLQAP LHFMPRFNLP GSLEFQQAAA GSRGSPLQLG SMLMQQQPSQ 540 HLGLGLSESN LGMLAALNAY SRGGLNMNSD HQQSHHHPLD HHQQQHHQHQ TTDSGDEGPN 600 SSQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 348 | 356 | GGRDSGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr039901.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009345828.1 | 0.0 | PREDICTED: transcription factor TCP8-like isoform X1 | ||||
Refseq | XP_009345851.1 | 0.0 | PREDICTED: transcription factor TCP8-like isoform X1 | ||||
TrEMBL | A0A498HVJ7 | 0.0 | A0A498HVJ7_MALDO; Uncharacterized protein | ||||
STRING | XP_009345828.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009345851.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 4e-68 | TCP family protein |