|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pbr039770.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
Family |
ERF |
Protein Properties |
Length: 231aa MW: 25125.1 Da PI: 8.4742 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pbr039770.1 | genome | CPETR | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 64 | 3.2e-20 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa++ l+g
Pbr039770.1 30 RYRGVRRRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARILRG 79
69*******.**********883....5***********************9998 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MRRGRGAATR AAGPPAEPTG YRPSIGKEVR YRGVRRRPWG RFAAEIRDPW KKTRVWLGTF 60 DSAEDAARAY DAAARILRGP KAKTNFPISC AYPPFYNNPT DPAIEAKLFG SGYGFQDNPV 120 VHPQRPASSS LSSTVESFSG PRPPPQFTTM AAELSRPKRQ PRTPPMVPED CHSDCDSSSS 180 VVEDDEDFVA SSSFRKAPLP FDLNFPPLDV DGDLGGGVDG HDLRCTALCL *
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | GU732476 | 0.0 | GU732476.1 Malus x domestica AP2 domain class transcription factor (AP2D52) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Galuschka C,Schindler M,Bülow L,Hehl R
AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Giuntoli B,Perata P
Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles. Plant Physiol., 2018. 176(2): p. 1143-1155 [PMID:29269576]
|