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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pbr039176.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
| Family |
MYB_related |
| Protein Properties |
Length: 302aa MW: 32463.4 Da PI: 9.6179 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr039176.1 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 80 | 108 | 3 | 31 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartm 31
+WT+eE++l++ + ++ G+g+W I+r +
Pbr039176.1 80 AWTEEEHKLFLVGLQMVGNGDWGGISRNF 108
7************************9976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MSHTCSQCGN NGHNSRKCTD VSGGGCGGPT TENGIMLFGV RVTEGNAFRK SADTNAEAGY 60
ASDDVVHASG HRRERRRGVA WTEEEHKLFL VGLQMVGNGD WGGISRNFVA SHAQKYFLRR 120
NNHNRRRRRS SLFDITTDTP LNSLMEEDLG ETSPSVVPVL PFPPQPRSNL GCNILGGFPV 180
STFPAALPVT GESSPIQSKL ISSGLNMKSL QDMQQSQTKV SQTTTRPIRP IPLHPPVVPP 240
SSKLAGFNLK NKYSSSPTRD PLPLSLKLST TPSEEQSATT TSHSSTFQVM SSGTDSIISV 300
A*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FR828549 | 2e-35 | FR828549.1 Rosa rugosa mRNA for putative MYB transcription factor (myb16 gene). |
