PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039133.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 881aa    MW: 97946.1 Da    PI: 7.2271
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039133.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.2e-15530589155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Pbr039133.1 530 SRFRGVSRHRWTGRYEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 589
                  789******************988855556447*************************98 PP
2AP253.36.9e-17632683155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  Pbr039133.1 632 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 683
                  89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF044314.6E-144190IPR007524Pectate lyase, N-terminal
SuperFamilySSF511265.59E-9594445IPR011050Pectin lyase fold/virulence factor
Gene3DG3DSA:2.160.20.101.9E-127103429IPR012334Pectin lyase fold
PRINTSPR008071.6E-81126143IPR018082AmbAllergen
PRINTSPR008071.6E-81150175IPR018082AmbAllergen
SMARTSM006563.1E-98178375IPR002022Pectate lyase/Amb allergen
PRINTSPR008071.6E-81186202IPR018082AmbAllergen
PfamPF005442.2E-20186369IPR002022Pectate lyase/Amb allergen
PRINTSPR008071.6E-81250271IPR018082AmbAllergen
PRINTSPR008071.6E-81330349IPR018082AmbAllergen
PRINTSPR008071.6E-81352371IPR018082AmbAllergen
PRINTSPR008071.6E-81394418IPR018082AmbAllergen
PRINTSPR008071.6E-81423446IPR018082AmbAllergen
SuperFamilySSF541719.81E-16530598IPR016177DNA-binding domain
CDDcd000181.18E-18530598No hitNo description
PfamPF008471.2E-11530589IPR001471AP2/ERF domain
SMARTSM003807.5E-25531603IPR001471AP2/ERF domain
PROSITE profilePS5103219.572531597IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-14531597IPR001471AP2/ERF domain
CDDcd000184.27E-23632693No hitNo description
PfamPF008471.9E-12632683IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-17632693IPR016177DNA-binding domain
SMARTSM003801.2E-24633697IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-17633692IPR001471AP2/ERF domain
PROSITE profilePS5103218.465633691IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0030570Molecular Functionpectate lyase activity
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MAAMFNSSYF FLCLFFLSFA AFVSSNDGST DVANEDTMVL DLDAYWKERA QEALKEAMES  60
YHKNPEQAAE EFHTGVAELL SKENTTRRNL RGNKGYNGPC MATNPIDACW RCDANWANNR  120
KKIVGCAQGF GKKATGGKDG PIYVVTVGTD NDVQNPKPGT LRHAVIQKGP LWIIFARSMV  180
IRLEQELMVT SDKTIDGRGA NVVIEEGGGI TLQFVKNVII TNLHIKMIVS KPGGMIRDSV  240
DHMGLRTKSD GDGISLFGAS NVWIDHVSMS RCADGLIDAV MASTAITISN SHFTDHDDVM  300
LFGANNAHTQ DKIMQITLAF NHFGQGLVQR MPRVRHGFFH VVNNDYTHWI MYAIGGNMNP  360
TIISQGNRFI APANAATKQV THREHTPESE WKNWEWRSEG DLMMNGAFFV ESGSGASQHP  420
AKLDMMPFQP GTFATKLTKF SGALNCVMDL TTSAVKSELI SPGRRPLCTI EVDALVSKCV  480
KRRRRDSSAV AAATAPGNSD QQGDQRLKQQ AEADQSPTST TTTTTVKRSS RFRGVSRHRW  540
TGRYEAHLWD KGSWNPTQRK KGKQVYLGAY DEEESAARAY DLAALKYWGT STFTNFPVPD  600
YESEIEIMNT LTKEEYLASL RRRSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY  660
LGTYGTQEEA AHAYDIAAIE YRGINAVTNF DLSTYIRWLR PGSNSLGPQE PKSNPDQPLP  720
MPTSSNGVPL RKEGGQMSMF QPNSFAVDDI DASKNRDIFP RQQQPPMPVS PCPKSSSSPT  780
ALGLLLQSSI FKELVEKNLN GDNEESEKND SNLLPEQHNS DNIKQILYEE MRNNPFTCPS  840
NNDVLPALES QEESLLPLCN SRDQPLWNGA LNMFTSPDFN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1pxz_A9e-901044442345Major pollen allergen Jun a 1
1pxz_B9e-901044442345Major pollen allergen Jun a 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1555563PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039133.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360393.10.0PREDICTED: probable pectate lyase 3
SwissprotQ9M9S20.0PLY3_ARATH; Probable pectate lyase 3
TrEMBLA0A498IC600.0A0A498IC60_MALDO; Pectate lyase
STRINGXP_009360393.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.12e-74AP2 family protein
Publications ? help Back to Top
  1. Honys D,Twell D
    Comparative analysis of the Arabidopsis pollen transcriptome.
    Plant Physiol., 2003. 132(2): p. 640-52
    [PMID:12805594]
  2. Sun L,van Nocker S
    Analysis of promoter activity of members of the PECTATE LYASE-LIKE (PLL) gene family in cell separation in Arabidopsis.
    BMC Plant Biol., 2010. 10: p. 152
    [PMID:20649977]
  3. Kulikauskas R,McCormick S
    Identification of the tobacco and Arabidopsis homologues of the pollen-expressed LAT59 gene of tomato.
    Plant Mol. Biol., 1997. 34(5): p. 809-14
    [PMID:9278171]