PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr039096.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 466aa MW: 51733.7 Da PI: 7.1843

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr039096.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.9	2.8e-51	17	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 + pGfrFhPtdeelv +yLk+k ++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ Pbr039096.1 17 MLPGFRFHPTDEELVGFYLKRKGQQRPLSI-ELIKQLDIYKFDPWDLPKLAASGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSega 113 579*************************.89***********8888899***********************************9777 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Pbr039096.1 114 csSSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 148 766667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-56	15	182	IPR003441	NAC domain
PROSITE profile	PS51005	55.534	17	182	IPR003441	NAC domain
Pfam	PF02365	1.2E-24	19	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MDERSDNIGG EKMDEVMLPG FRFHPTDEEL VGFYLKRKGQ QRPLSIELIK QLDIYKFDPW 60 DLPKLAASGE KEWYFYCPRD RKYRNSTRPN RVTGAGFWKA TGTDRPIYSS EGACSSSKCI 120 GLKKSLVFYK GRAAKGVKTD WMMHEFRLPS LTDSLSPKRS SSFMDKTIPA NDSWAICRIF 180 KKTNSSNAHQ RALSHHSWVS VLPETNTFGD HMLGSKGTHS TTHQHHEFSS ESMSILTSKT 240 DFSGNNNDIQ ISSTTSNISP LDIYPNPYKP VNPVMMGCNV KLPYQYFPIS SHFPSGSSEY 300 FSNPSFTFPS PLETSSGQSA PKCTVDVSSL LNMSSSMLGD YNGSNNVKGA STESTNFDFS 360 TTNGGFSSMA LPHHHEVMQG SNNNLGNVYD NIAGLIKNIQ NVNSNVTEER DDQQWETSAR 420 SNIGFPLMSS LPLPVDVGGG DAWKSSLTWE SSPCPTEMST TRCYT*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MDERSDNIGG EKMDEVMLPG FRFHPTDEEL VGFYLKRKGQ QRPLSIELIK QLDIYKFDPW  60
DLPKLAASGE KEWYFYCPRD RKYRNSTRPN RVTGAGFWKA TGTDRPIYSS EGACSSSKCI  120
GLKKSLVFYK GRAAKGVKTD WMMHEFRLPS LTDSLSPKRS SSFMDKTIPA NDSWAICRIF  180
KKTNSSNAHQ RALSHHSWVS VLPETNTFGD HMLGSKGTHS TTHQHHEFSS ESMSILTSKT  240
DFSGNNNDIQ ISSTTSNISP LDIYPNPYKP VNPVMMGCNV KLPYQYFPIS SHFPSGSSEY  300
FSNPSFTFPS PLETSSGQSA PKCTVDVSSL LNMSSSMLGD YNGSNNVKGA STESTNFDFS  360
TTNGGFSSMA LPHHHEVMQG SNNNLGNVYD NIAGLIKNIQ NVNSNVTEER DDQQWETSAR  420
SNIGFPLMSS LPLPVDVGGG DAWKSSLTWE SSPCPTEMST TRCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-53	19	187	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-53	19	187	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-53	19	187	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-53	19	187	19	170	NO APICAL MERISTEM PROTEIN
3swm_A	5e-53	19	187	22	173	NAC domain-containing protein 19
3swm_B	5e-53	19	187	22	173	NAC domain-containing protein 19
3swm_C	5e-53	19	187	22	173	NAC domain-containing protein 19
3swm_D	5e-53	19	187	22	173	NAC domain-containing protein 19
3swp_A	5e-53	19	187	22	173	NAC domain-containing protein 19
3swp_B	5e-53	19	187	22	173	NAC domain-containing protein 19
3swp_C	5e-53	19	187	22	173	NAC domain-containing protein 19
3swp_D	5e-53	19	187	22	173	NAC domain-containing protein 19
4dul_A	4e-53	19	187	19	170	NAC domain-containing protein 19
4dul_B	4e-53	19	187	19	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr039096.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009360491.1	0.0	PREDICTED: protein FEZ
Swissprot	Q9ZVH0	4e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A498IBN2	0.0	A0A498IBN2_MALDO; Uncharacterized protein
STRING	XP_009360491.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-101	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]