PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 656aa MW: 72976.6 Da PI: 9.6162 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.4 | 5.8e-07 | 562 | 611 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Pbr038996.1 562 RRPFSVPEVEALVQAVEKLGTGRWRDVKLRAFestKHRTYVDLKDKWKTL 611 567888899*****************9888889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 7.7E-7 | 369 | 445 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 13.782 | 557 | 616 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.7E-15 | 559 | 648 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-7 | 561 | 614 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-10 | 562 | 612 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 7.54E-16 | 563 | 613 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MVLQRRLDYG FSGYRMPEVP RASRSARGRG PIRKKLEANQ IHAFEILASV AGKLLQESKD 60 PLPTNDSCGK DPHFKFGGIT KSKQQDKGRL LKEEPCESGS CDEETFLYVH GLQERRKSYT 120 LNGVSHSQEN FSYEINSVSK SLDSERINFG KGLGAVDGRN SCGSHSNKVV NESPLAEDSI 180 AEKPQGLLKR KQVTEPSQDT SIKEERTEFL GSSEDVMEME ERPHELVSSR HDVKTPFSGD 240 CKNHGPFLGH CANIRVVNRD DDKNTMTKEF EHPPEDGDKK ITNLAAPGHD GKIRQANCNW 300 RTCYAHQRSQ KIYPFKKRKF FNWRPLATSD RGCNCEGIFN TPDKILKSDN CCAAVGSSST 360 TGQQVPPKSN DCNVKLSIKS FKVPELFIEV PTTATVGSLK RTVMEAVTSI LGDGLHVGIL 420 VQGKKVRDDN KTLLQTGISQ DDKRHNLGFI LEPKRAKLTY PPSSEDPSLV SGRSQELTRH 480 SASLVSQPGT SDVSMSPPVL SLGGCIERDF KEVPSLASTS TDKTPPTSQA LVAVPPISMK 540 ALAVVPFHRK SGHQEYVQRR IRRPFSVPEV EALVQAVEKL GTGRWRDVKL RAFESTKHRT 600 YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLAAHA YWSQRHAKQQ VKAAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 2e-51 | 546 | 652 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 309 | 318 | QKIYPFKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038996.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009345402.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
TrEMBL | A0A498K7F0 | 0.0 | A0A498K7F0_MALDO; Uncharacterized protein | ||||
STRING | XP_009345402.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13188 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-106 | TRF-like 2 |