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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | CO-like | ||||||||
Protein Properties | Length: 448aa MW: 50137.3 Da PI: 4.8059 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.9 | 2e-08 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k++++fC ++ +lC+ C + H+ H++v Pbr038936.1 16 ARACDSCLVKRARWFCAADDAFLCQRCDASVHSAnqlasrHERV 59 678*****************************667888888876 PP | |||||||
2 | CCT | 67.9 | 2.7e-23 | 378 | 421 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Pbr038936.1 378 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 421 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.7E-10 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.608 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.0E-7 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.58E-9 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 378 | 420 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.1E-18 | 378 | 420 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MITDKKAANA MGGNTARACD SCLVKRARWF CAADDAFLCQ RCDASVHSAN QLASRHERVR 60 LQGSSFKANE PMQLTADQAT PAWHRGVKRK ARTPRHNKKP GFPIKEEQEK VGLHPPLPFV 120 PEIGCEEANL MEDEENEDLE QLLYRVPIYD PFAAKLCNIS STDQVENNTD AINLDDEEIE 180 IRNMGDNHEG VQDDLDKLGG FLPTEMELAE FAADVENLLG GGLDEDCSDI KGVLGLLDDG 240 KEVKVEEEVE GMEFNPSILD WNLDYDKSSA VPVQMGNEDN EEEEKLVLLT GAQSSDEMAF 300 MENKHMEMKR KKICLRLDYE TVITAWASQG SPWTNGTRPE LNPDDGWLDC MGMWPTEIPQ 360 PHGDTAGCVS GRGDDRGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR 420 TTSSFGGVGS SSSNAPAAAF PYLMINK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 388 | 404 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038936.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360161.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like | ||||
TrEMBL | A0A498I0C6 | 0.0 | A0A498I0C6_MALDO; Uncharacterized protein | ||||
STRING | XP_009360161.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 6e-78 | B-box type zinc finger protein with CCT domain |