PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038922.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 301aa    MW: 34193.3 Da    PI: 6.2538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038922.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.3e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
      Pbr038922.1 22 RGPWTLEEDSLLIQYIARHGEGRWNLLAKRSGLRRTGKSCRLRWLNYL 69
                     89********************************************97 PP
2Myb_DNA-binding52.61e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
      Pbr038922.1  75 RGNLSPEEQLLILDLHSKMGNK-WSKIAQYLP-GRTDNEIKNYWRT 118
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5441969IPR017930Myb domain
SuperFamilySSF466891.65E-3120116IPR009057Homeodomain-like
SMARTSM007171.4E-162171IPR001005SANT/Myb domain
PfamPF002491.7E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-232376IPR009057Homeodomain-like
CDDcd001673.13E-132469No hitNo description
PROSITE patternPS0017503746IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.14370124IPR017930Myb domain
SMARTSM007179.0E-1574122IPR001005SANT/Myb domain
PfamPF002492.4E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2477123IPR009057Homeodomain-like
CDDcd001671.12E-1179118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSTKTKTLSS SSSGEDYGEL RRGPWTLEED SLLIQYIARH GEGRWNLLAK RSGLRRTGKS  60
CRLRWLNYLK PDVKRGNLSP EEQLLILDLH SKMGNKWSKI AQYLPGRTDN EIKNYWRTRV  120
QKQARHLRID TSSVEFQNMI RCFWMPRLQQ KIGGGTSISS AVLNQNHAIS QPLEDNTFPH  180
FTATISPPPQ NIVQEEINMS ASMYNLDVEK QNTKAEYSTG PYILPSEPMD MSKTVQFPEC  240
PPFHCGDNNG YDTESFNLQE TVSADSAPNF PGNSAGDCYV AETYWFDSDF LCGIWNADEM  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27191244108B-MYB
1gv2_A1e-26191241105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-261912424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038922.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2678990.0DQ267899.1 Malus x domestica cultivar Royal Gala MYB8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360147.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A498I5D40.0A0A498I5D4_MALDO; Uncharacterized protein
STRINGXP_009360147.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-72myb domain protein 62