PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pbr038856.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WOX

Protein Properties

Length: 378aa MW: 42922.9 Da PI: 7.0654

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr038856.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.4	4.4e-22	90	149	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Pbr038856.1 90 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 149 7***************99************************************97 PP
2	Wus_type_Homeobox	115.6	2.4e-37	89	151	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Pbr038856.1 89 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 151 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.6E-5	87	154	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-9	90	149	IPR009057	Homeodomain-like
Pfam	PF00046	8.8E-20	90	149	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.29E-12	90	155	IPR009057	Homeodomain-like
CDD	cd00086	1.15E-6	91	151	No hit	No description
PROSITE profile	PS50071	11.224	95	150	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MWMMGYNDGG HGDFNMPDSF NGRKLRPLVP RPLPSVNNTV SSTITTPPCL NRSAIHGSHD 60 FFPQYHQLAA MAEQNKRSEF LNTPQVVVSS RWNPTPEQLR ALEELYRRGT RTPSAEQIQH 120 ITAQLRKYGK IEGKNVFYWF QNHKARERQK RRRQMESSAL SADHDQPLQI SMTSADNQKK 180 EESLGAGRTE FEVEETKNWA PFTNCSTTTL AEESVSIQRA AKARMAAAEC RADGWIQFDE 240 EELQQRRNFV ERNATWQMMQ LSCPSHPHPP THLINTPPTC ASTTTRSRAA ATGRTMDQSL 300 IKSHDLSIFI APYASETVFN IEQDHGCEES QTLQLFPLRS GHANTNELSI SEKDHEELSA 360 SFSAHPYPFF EFLPLKN*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MWMMGYNDGG HGDFNMPDSF NGRKLRPLVP RPLPSVNNTV SSTITTPPCL NRSAIHGSHD  60
FFPQYHQLAA MAEQNKRSEF LNTPQVVVSS RWNPTPEQLR ALEELYRRGT RTPSAEQIQH  120
ITAQLRKYGK IEGKNVFYWF QNHKARERQK RRRQMESSAL SADHDQPLQI SMTSADNQKK  180
EESLGAGRTE FEVEETKNWA PFTNCSTTTL AEESVSIQRA AKARMAAAEC RADGWIQFDE  240
EELQQRRNFV ERNATWQMMQ LSCPSHPHPP THLINTPPTC ASTTTRSRAA ATGRTMDQSL  300
IKSHDLSIFI APYASETVFN IEQDHGCEES QTLQLFPLRS GHANTNELSI SEKDHEELSA  360
SFSAHPYPFF EFLPLKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr038856.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009360081.1	0.0	PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBL	A0A498I4V8	0.0	A0A498I4V8_MALDO; Uncharacterized protein
STRING	XP_009360081.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2892	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	4e-51	WUSCHEL related homeobox 1