PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038717.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 316aa    MW: 34732.6 Da    PI: 9.182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038717.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.8e-13243288655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Pbr038717.1 243 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 288
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16240303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-12241290No hitNo description
Gene3DG3DSA:4.10.280.102.7E-14242297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-10243288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-12243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDSNTHQPNS GMLRFRSAPS NLLANFADGG DSGLHSTNPD EGSLESERLF SRFANYSHTN  60
DSDSWPSSFQ ELDDKSVVTA TKAAVPASRV SSQGGYSGLL PPHYPRQSSF NGGYGLAGSG  120
AMEHHHTAAN KSLHSTSNVV RQSSSPAGLF SNTSVQNGFP FGTWNNSSNF PENIGGLKRD  180
HHDGKLFSVD QSGELENRIH VLSHHLSLPK TSAEMAMEKF LQLQDSVPCK IRAKRGCATH  240
PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA VDYIKDLQKQ FKTLSDVRAN  300
CKCLNMQKQV SNRTV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345105.20.0PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR38e-96BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A498HZ330.0A0A498HZ33_MALDO; Uncharacterized protein
STRINGXP_009345105.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]