PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038634.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 759aa MW: 82455.4 Da PI: 5.7134 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 96.7 | 2.1e-30 | 90 | 174 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f+++ea Pbr038634.1 90 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSEMEA 174 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 107 | 1.3e-33 | 484 | 569 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e r++++ k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a Pbr038634.1 484 RWPKAEVLALIKLRSGLEPRYQEAGPKGPLWEEISAGMGRMGYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 569 8*********************************************************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.036 | 87 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 7.06E-27 | 89 | 154 | No hit | No description |
Pfam | PF13837 | 1.4E-21 | 89 | 175 | No hit | No description |
PROSITE profile | PS50090 | 6.423 | 89 | 147 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.143 | 477 | 541 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.1E-4 | 481 | 543 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.3E-22 | 483 | 570 | No hit | No description |
CDD | cd12203 | 1.75E-29 | 484 | 548 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 759 aa Download sequence Send to blast |
MQQQPAAGGA GGVGGSQTHY GGGGEMSAAE AEASAEQGQL VVEAASPISS RPPASAAVNM 60 DELMTLSGAA VAAEDALADR SGGGGSSGNR WPRQETLALL KIRSDMDAAF RDATLKGPLW 120 EDVSRKLAEL GYKRNAKKCK EKFENVHKYY KRTKEGRAGR QDGKSYKFFS EMEALHGTAA 180 ATTANVSASS GVHAAHASPN PVSVGFGPVS NPMPISSFRM SPTIPVMPSQ QQQQATAIQI 240 IPSSQPTATP MDVNFSSNSS STSPGTEDED DDDDMEGEPS SRKRKRGSAS TSTGTSGGGS 300 TRKMMAFFEV LMKQVMQKQE SMQRRFLEVI EKREQDRTIR EEAWKRQEMA RLTREHELMS 360 QERAISASRD AAIIAFLQKI TGQTIQLPPA VNVQVAPPPP VSPSVSVVAP LPQTTPQPTT 420 QTYQIPQQQQ PQPPQQVQQV RHAQQTQNVQ AVMAVPEQQV PPTPQENIAS GGGGGSSEPA 480 SSSRWPKAEV LALIKLRSGL EPRYQEAGPK GPLWEEISAG MGRMGYKRSS KRCKEKWENI 540 NKYFKKVKES NKKRPEDAKT CPYFHELDAL YRKRVLGGGS SGGSSSSLGN RLEQQPQQQE 600 NPKSGSSTHP QPSAHTVSQT QGQVVAAGSE NKDADHSTSV ETNLRANLFG EGKEEAAKKP 660 EDIVKELMEV HDHHQQVFQG LPQHLVVEDY NRIEEADSDN LMDQEEEDME DDDIDEEDDE 720 ETEQERKMAY KIEFQKQNTG RSSNGGGNGA PSFLAMVQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | KRNAKKCKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038634.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360257.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1 isoform X1 | ||||
Swissprot | Q39117 | 2e-68 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A498JJ11 | 0.0 | A0A498JJ11_MALDO; Uncharacterized protein | ||||
STRING | XP_009360257.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 6e-46 | Trihelix family protein |