PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038615.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 830aa MW: 91841.9 Da PI: 4.51 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.9 | 8.1e-53 | 235 | 370 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++++ePwdLpk +k++++ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ Pbr038615.1 235 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCRWEPWDLPKlsVIKSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRq 331 699************************999.99***************5458889999**************************************98 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg+kktLvfy+grapkge+t+W+mheyr+ Pbr038615.1 332 cksasnSNGQVGMKKTLVFYRGRAPKGERTSWIMHEYRA 370 8777766667***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51292 | 13.946 | 55 | 117 | IPR011016 | Zinc finger, RING-CH-type |
SMART | SM00744 | 6.1E-7 | 67 | 111 | IPR011016 | Zinc finger, RING-CH-type |
Pfam | PF12906 | 8.9E-9 | 69 | 110 | IPR011016 | Zinc finger, RING-CH-type |
SuperFamily | SSF57850 | 9.36E-8 | 72 | 112 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.0E-9 | 77 | 111 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF101941 | 7.72E-61 | 227 | 393 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.46 | 235 | 393 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-27 | 236 | 369 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 830 aa Download sequence Send to blast |
MGGEKESENG ELLDLEKQQL GGGGPETSSL PSLATVDTVL PLQQVVVSGG ASSEVHEPPT 60 VTATVNFSEE EKDEVLIDLG CQCRGGLAKS HRSCIDAWFR SRGSNKCEIC QGVAANVASP 120 EAQPTASYWV WRVDSSYRSQ NRDRGCVSPL YVAFSILIGG LLLDVLISVT LGVSALPINI 180 IIGIIVVLGL GTALRLALEF FHEWSVRRVV RRVDASHTNV PLGYHPMAEL SMESLPLGFR 240 FRPTDEELIN HYLRLKINGR DSEVRVIPEI DVCRWEPWDL PKLSVIKSDD QEWFFFCPRD 300 RKYPNGHRSN RATDAGYWKA TGKDRTIKSR QCKSASNSNG QVGMKKTLVF YRGRAPKGER 360 TSWIMHEYRA TQKELDGTGP GQGAFVLCRL FHKPEEKADV PKYDEVEQTG LSPTPTKSSP 420 DESSDIIQET ATSEIQGENQ AEGIMRWLTD NSDNVTPDAL PPLPDFFMAS DVEDQGAVET 480 GIQGHLTMEE NPAFYESLGG PIDCKVFSPL HSQINAELEH FMGSPFTSDF GNYDNGLHFQ 540 DGTCELDVSL TELLDEFGNS HYESSCEEST SQKNLVIGNE TYLSGNACTT PPVNSCFNGA 600 WDNTDTNITQ HDLQRMASGL YNEQFGSEDL QNTSFGYWQA EAQALLDDQK PRMGKMADSY 660 LSECSFAEQF PVSSVNDGLD DSRSWNHGVD HVGGTGIKIR ARGPQLQPNT DNFVYQGTAA 720 RRLRLSVDRS SGSITNGNES DENYSREDDE VQSTITQPRE DIGQSPTSDE QEEEHAIFND 780 KEELSSRNNS INHGCDPDGR SRIMMTKKNY RAGIILLTMV VILMVEVES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-44 | 222 | 393 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-44 | 222 | 393 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-44 | 222 | 393 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-44 | 222 | 393 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-44 | 222 | 393 | 7 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-44 | 222 | 393 | 7 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-44 | 222 | 393 | 7 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-44 | 222 | 393 | 7 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-44 | 222 | 393 | 7 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-44 | 222 | 393 | 7 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-44 | 222 | 393 | 7 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-44 | 222 | 393 | 7 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-44 | 222 | 393 | 4 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-44 | 222 | 393 | 4 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038615.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360232.1 | 0.0 | PREDICTED: NAC domain-containing protein 14 | ||||
TrEMBL | D9ZJA7 | 0.0 | D9ZJA7_MALDO; NAC domain class transcription factor | ||||
STRING | XP_009360232.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13625 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 1e-138 | NAC 014 |