PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038573.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 469aa    MW: 52096.5 Da    PI: 6.0285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038573.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35e-12293338454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RRd++N +f  Lr ++P+       +++Ka+ L  Av YI++L
  Pbr038573.1 293 NHVEAERQRRDKLNRRFYALRAVVPNV-----SRMDKASLLSDAVIYINEL 338
                  799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-3722201IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.66E-16287353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.37E-14287342No hitNo description
PROSITE profilePS5088816.367289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15293350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEGTNSSCSS YNFGQENSLT LQRLQFIIQN RPEQWVYSIF WQASSKDSND LVSLSWAGGH  60
FRSTGDLASK QSYNKANVFD VVDRKNGISR EVEALFYEDM DLDGGDVTDA EWFYFYTASL  120
TQSFTAGHGN ILGRTFCSGD FVWLAGDHEL QFYECERVKE ARMHGIHTLV CIATSCGVLE  180
LASLDAIKVD WGLVQISKSL FGSKNNNMVS KQLSSSREDH VLVPLLESGM FSGAEQIEGT  240
TQGGTKEVDP VTIGGSPSDS VGNFTSENME NIRLKKRGRS SNSETGRSET PINHVEAERQ  300
RRDKLNRRFY ALRAVVPNVS RMDKASLLSD AVIYINELKA RVVQLEAKIQ AQPGKPVVDI  360
GGQTTTSIVD HHQTRPQQSS NYNNKAAGAM KIDVKILGSE AMIRVQCPDC DYPNARLMNV  420
LKDLELQVYH ASLSSVKEWM LQDVVGRVPQ GFTSEEALRI AIIKGWYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-24286348263Transcription factor MYC2
5gnj_B2e-24286348263Transcription factor MYC2
5gnj_E2e-24286348263Transcription factor MYC2
5gnj_F2e-24286348263Transcription factor MYC2
5gnj_G2e-24286348263Transcription factor MYC2
5gnj_I2e-24286348263Transcription factor MYC2
5gnj_M2e-24286348263Transcription factor MYC2
5gnj_N2e-24286348263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273279LKKRGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038573.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360190.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A498JIU60.0A0A498JIU6_MALDO; Uncharacterized protein
STRINGXP_009360190.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-63bHLH family protein