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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pbr038565.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family |
NAC |
Protein Properties |
Length: 373aa MW: 41551.9 Da PI: 9.0277 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pbr038565.1 | genome | CPETR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 174.3 | 3.5e-54 | 8 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96
lppGfrFhPtdeel+ +yL kkv++++l++ +vi+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ +
Pbr038565.1 8 LPPGFRFHPTDEELILHYLVKKVASTPLPV-SVIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVAPsgG 104
79****************************.99***************988899***************************************99889 PP
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128
g++vg+kk Lvfykgr pkg kt+W+mheyrl
Pbr038565.1 105 GQNVGVKKALVFYKGRPPKGIKTNWIMHEYRL 136
999***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 373 aa
Download sequence Send
to blast |
MKNPESRLPP GFRFHPTDEE LILHYLVKKV ASTPLPVSVI AEVDIYKFDP WELPAKAAFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA PSGGGQNVGV KKALVFYKGR 120 PPKGIKTNWI MHEYRLPENP NNHTTTNHHH RVMKLKDLSM RLDDWVLCRI YKKSNVGTSA 180 VALPSDQNQE VQEEEDFLHD ILSPSLKSPF TGLDHNMKST SNTSSLKPQK SCSFSNLLDA 240 MDYSLLTSIL ADGQYSIPTG TGFQSTTPNK FSYSCTGSSS IGLDPQLLFN TDISSSSHLL 300 QTLPQYNGLN LPSSAPSTEN RLKRQHSITD DRGVLLCPSK KYVNSNCSFT NTANSFLNQQ 360 LLLSSPSFHF QE*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF198115 | 0.0 | KF198115.1 Malus hupehensis NAC domain protein (NAC24) mRNA, complete cds. |