PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr038530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 100aa MW: 11311.9 Da PI: 10.7171 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a++ a+++l+g Pbr038530.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDDAARRLYG 78 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.33E-28 | 28 | 88 | No hit | No description |
Pfam | PF00847 | 1.2E-13 | 28 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-38 | 29 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-31 | 29 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-22 | 29 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.537 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 100 aa Download sequence Send to blast |
MDNSRKSPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA 60 TAEEAAMAYD DAARRLYGPE AFLNLPHLQP SSNRLFCYG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 29 | 86 | 5 | 63 | ATERF1 |
3gcc_A | 2e-18 | 29 | 86 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr038530.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN204427 | 1e-136 | JN204427.1 Malus prunifolia dehydration-responsive element binding protein (DREB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008350282.1 | 3e-63 | dehydration-responsive element-binding protein 2F | ||||
Refseq | XP_009340780.1 | 3e-63 | PREDICTED: dehydration-responsive element-binding protein 2F-like | ||||
Swissprot | Q10R18 | 1e-47 | DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E | ||||
TrEMBL | I6N9Z4 | 7e-62 | I6N9Z4_9ROSA; Dehydration-responsive element binding protein | ||||
STRING | XP_009340780.1 | 1e-62 | (Pyrus x bretschneideri) | ||||
STRING | XP_008350282.1 | 1e-62 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5477 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57600.1 | 3e-37 | ERF family protein |