PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr038515.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 475aa MW: 51814.8 Da PI: 6.5097

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr038515.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.9e-32	255	309	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerF+eav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl Pbr038515.1 255 RPRMRWTPELHERFIEAVNRLDGAEKATPKGVLKAMNVEGLTIYHVKSHLQKYRL 309 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.306	252	312	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-30	254	310	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-17	254	309	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-24	256	310	IPR006447	Myb domain, plants
Pfam	PF00249	4.7E-9	257	308	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-22	345	392	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MKVGLPSAIM SHHGVISVPQ SETTKGVTSS YCTSPSPIHE FLGSESEGRS FTASKCSSPR 60 VSPFKRAESL GSPTNMRGSP VQHSKSPFSR SSVFCTSLYQ SSSSSSETSR QLGKFPFLPH 120 PPAYGQFNSA VDSKSPLLFS EDMSNQYDDE QSDDLMKDFL NLHGDASHGS FHDISCGSDT 180 LALTEQLDLQ FLSDQLDIAI TDNGENPGLD EIYEIPQASP HTAIGLTCSK GSCVTAPLVN 240 ALSSHPSPGP ASAHRPRMRW TPELHERFIE AVNRLDGAEK ATPKGVLKAM NVEGLTIYHV 300 KSHLQKYRLA RYMPEKKEDK KASNSEEKKA TSTINESDGR RKGSIHITEA LRLQIEVQKQ 360 LHEQLEVQRA LQLRIEDHAK YLQKIFENQQ KAGSALLSPQ VLSSLTTNSI QVSEQQPSSS 420 SCVSLPQLAE SDSLSPLSLK HKATDCSDSE LSAGTKRPRL EEKPDEGAVE NPQL*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MKVGLPSAIM SHHGVISVPQ SETTKGVTSS YCTSPSPIHE FLGSESEGRS FTASKCSSPR  60
VSPFKRAESL GSPTNMRGSP VQHSKSPFSR SSVFCTSLYQ SSSSSSETSR QLGKFPFLPH  120
PPAYGQFNSA VDSKSPLLFS EDMSNQYDDE QSDDLMKDFL NLHGDASHGS FHDISCGSDT  180
LALTEQLDLQ FLSDQLDIAI TDNGENPGLD EIYEIPQASP HTAIGLTCSK GSCVTAPLVN  240
ALSSHPSPGP ASAHRPRMRW TPELHERFIE AVNRLDGAEK ATPKGVLKAM NVEGLTIYHV  300
KSHLQKYRLA RYMPEKKEDK KASNSEEKKA TSTINESDGR RKGSIHITEA LRLQIEVQKQ  360
LHEQLEVQRA LQLRIEDHAK YLQKIFENQQ KAGSALLSPQ VLSSLTTNSI QVSEQQPSSS  420
SCVSLPQLAE SDSLSPLSLK HKATDCSDSE LSAGTKRPRL EEKPDEGAVE NPQL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-26	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr038515.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009344989.1	0.0	PREDICTED: myb family transcription factor PHL6-like isoform X1
Swissprot	Q949U2	1e-134	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A498J303	0.0	A0A498J303_MALDO; Uncharacterized protein
STRING	XP_009344989.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13469	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-112	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]