PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 422aa MW: 46394.1 Da PI: 4.393 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 47 | 96 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Pbr038419.1 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.21E-32 | 46 | 103 | No hit | No description |
PROSITE profile | PS51032 | 19.559 | 47 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-27 | 47 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-34 | 47 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-19 | 47 | 104 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-13 | 47 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-8 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-8 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MARKRKVSEG VEDNSATSSE GTMGWDEMVK EASAVAELGG ARRARKRFVG VRQRPSGRWV 60 AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSHSP SSTPALPSKI 120 TNLLLQRLKA RNNANSCSPP SAPLPIINHQ HDNNLHEQAA KTELSETYTD FLNDPEDYYI 180 TSSNNHDIIT DHISASSIDY MTSSLESCLT NKETDHIEYG NLSELVQQTY SCGDANFAAE 240 GSEEDVDPEQ EQEEEMNGDQ VGVIDFQFVD DIGASNSNCY SPSPFEIAEE IEEPVLEAES 300 YTDEPSMLRA AMKRMKYERK FSASLYAFNG IPECLKLRIG SVNGNGKGRG VSECLSNLQR 360 ACGNKKEEEV VVTVGAAGEH QRNDSKQEEQ GSSMDVSLSG DGELSLWSSL DLPPICFLST 420 N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038419.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360645.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2E-like | ||||
TrEMBL | A0A498HCV0 | 0.0 | A0A498HCV0_MALDO; Uncharacterized protein | ||||
STRING | XP_009360645.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-23 | related to AP2 11 |