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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr037963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 498aa MW: 56371.9 Da PI: 4.6946 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 2e-14 | 162 | 239 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + l lpkkf+ eh +++++ ++ledesg+++ k+ +k + l++GW++F a++L egD+vvF++ + ++l+v ++r+ Pbr037963.1 162 KELGLPKKFCCEHL--PKQDTIIVLEDESGEEFYTKYLLEKVG----LSGGWRGFSIAHDLLEGDVVVFHVL--TPTKLKVYIVRS 239 4589******9994..346789***************655555....***********************43..677789999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.025 | 149 | 240 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-9 | 150 | 240 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-15 | 157 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-16 | 162 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.4E-12 | 162 | 239 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.26E-16 | 164 | 238 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MDVYYKAKNY SIFYFQVQGR NCCEVRPRGD SLGSFRELVD WVAACDGELV MDVYYKAKNY 60 SIFYFQVQGR NCCEVRPRGD SLGSFRELVD WVAACDGELV MDVYYKAKNY SIFYFQVQGR 120 NCCEVRPRGD SLGSFRELVD WVAACDGELV MDVYYKAKNW EKELGLPKKF CCEHLPKQDT 180 IIVLEDESGE EFYTKYLLEK VGLSGGWRGF SIAHDLLEGD VVVFHVLTPT KLKVYIVRSN 240 GSDDLDGALG LMRLDACTKQ MDTGDIVACE REDSENLESI PEDNAIAFDT KSGPSSDHSG 300 NDSENLDFEV LDGLRLSETV VTFEEVNCME NFNVLVNGLN INSVFSKHIL RKYYELCCSQ 360 NAFLHEQLIE GLNCKLVAGV ISETVNIADA IRACKRTTSK GNFSTWDTTL KAFDDLGMNV 420 GFLRARLDHL ASLALKSKRF KEAKLEKDRA EEEKRNLEAK LVEVQSGINR LDSEMKTLNT 480 SSEKLELMFQ EVAKAPW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr037963.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009344651.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A498J3P7 | 0.0 | A0A498J3P7_MALDO; Uncharacterized protein | ||||
STRING | XP_009344651.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-26 | B3 family protein |