PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037875.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 1060aa MW: 118058 Da PI: 5.4985

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037875.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	158.9	9.8e-50	21	132	4	118
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 e ++rwl++ ei++iL nf k+++++e++++p+s + n k++ryfrkDG++w+kk+dgktv+E+hekLKvg+v+vl+cyYah+e++++fqrrcyw Pbr037875.2 21 EaQHRWLRPAEICEILSNFGKFQISSEPPNKPPS----MVNWKVLRYFRKDGHNWRKKRDGKTVKEAHEKLKVGSVDVLHCYYAHGEDDESFQRRCYW 114 449***************************98....78****************************************************** PP CG-1 101 lLeeelekivlvhylevk 118 +Le++l +iv+vhyl+vk Pbr037875.2 115 MLEQDLMHIVFVHYLQVK 132 *************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.926	15	137	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.6E-72	18	132	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-42	21	130	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	9.2E-5	474	567	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	3.42E-16	481	566	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	9.2E-4	672	772	IPR020683	Ankyrin repeat-containing domain
SMART	SM00015	13	882	904	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	9.29E-8	883	933	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	8.078	883	912	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0044	885	903	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0071	905	927	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.212	906	930	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.2E-4	908	927	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1060 aa Download sequence Send to blast
MAESGSYPQG PRLDFQQLLG EAQHRWLRPA EICEILSNFG KFQISSEPPN KPPSMVNWKV 60 LRYFRKDGHN WRKKRDGKTV KEAHEKLKVG SVDVLHCYYA HGEDDESFQR RCYWMLEQDL 120 MHIVFVHYLQ VKGHRANAGG IRENDEVAPD LQKGSPWTSS PSNSNGRAPS GYTDYASPSS 180 TLTSSWEDVD SGDSRQASSL FHSVFESPKM GNGPLVDNAE IDLSLHSSSK NHDGQSSIHG 240 VYRPEFDKDQ CRFTDDSTSV IDSQKTLGAG SWEEILEQCT MGFHDGTSHA SMSSTQISST 300 GVPLEQQTSG NNLLKEEFGS SLPLQTNWQF PLGDNSLQLP EWSLDQSMNL QGTPDANLSN 360 APDLVSAYLN QRNEQLVQDN LQAQLTNAES QCLIISSPEH DVPKDGNINY AFTLRQQLLD 420 REEGLKKVDS FSRWVSKELG EVDDLQMQSS SGISWITAEC GDVVDDSSLS PSISQDQLFS 480 IVDFSPKWAY TDSEIEVLVF GTFLVSQKEV TQYSWSCMFG EVEVPAKVLA SGVLFCFAPP 540 HSAGQVPFYV TCSNRLACSE VREFDYQVGS TKGLNMTDIC NDTAYEMHLH LRLESLLSLR 600 SVSPSGHLFG GVKENRNIIS KIISLKEEED YLHAAEPTVA NYLLQNEGME HLIKLMKEKL 660 YTWLLYKAIE DGKGPSVLDA EGQGVLHLAA ALSYNWAIKP TVTAGDAIGQ LTFFSETWSR 720 EQTVAVLVSL GADPGALTDP SPEVPLGRTP ADLASVNSHK GISGFLAESS LTTYFKSLTM 780 NDAKEDSAAE IPGTKVVKTF SERIATPVSY GDMPDALSLK DSLTAVTNAT QAADRIQQML 840 RMQSFERRRI TEHDIDELGM PDERAISLIT SKSHKVGPGN GFAHTAAVQI QKKFRGWKKR 900 KEFLIIRQRI VKIQAHVRGH QVRKQYKAIT WSVGILEKVI LRWRRKGTGL RGFRPDAVAK 960 IPSPQPVPSK EDDYDFLKKG RKQTEERLQK ALTRVKSMVQ YPEGRAQYRR LLNVVEGFRE 1020 TKVSGMAVEG SEEKAEGGED LIDIDKLLDD DTFMSIAFD*

Sequence ? help Back to Top

Protein Sequence Length: 1060 aa Download sequence Send to blast

MAESGSYPQG PRLDFQQLLG EAQHRWLRPA EICEILSNFG KFQISSEPPN KPPSMVNWKV  60
LRYFRKDGHN WRKKRDGKTV KEAHEKLKVG SVDVLHCYYA HGEDDESFQR RCYWMLEQDL  120
MHIVFVHYLQ VKGHRANAGG IRENDEVAPD LQKGSPWTSS PSNSNGRAPS GYTDYASPSS  180
TLTSSWEDVD SGDSRQASSL FHSVFESPKM GNGPLVDNAE IDLSLHSSSK NHDGQSSIHG  240
VYRPEFDKDQ CRFTDDSTSV IDSQKTLGAG SWEEILEQCT MGFHDGTSHA SMSSTQISST  300
GVPLEQQTSG NNLLKEEFGS SLPLQTNWQF PLGDNSLQLP EWSLDQSMNL QGTPDANLSN  360
APDLVSAYLN QRNEQLVQDN LQAQLTNAES QCLIISSPEH DVPKDGNINY AFTLRQQLLD  420
REEGLKKVDS FSRWVSKELG EVDDLQMQSS SGISWITAEC GDVVDDSSLS PSISQDQLFS  480
IVDFSPKWAY TDSEIEVLVF GTFLVSQKEV TQYSWSCMFG EVEVPAKVLA SGVLFCFAPP  540
HSAGQVPFYV TCSNRLACSE VREFDYQVGS TKGLNMTDIC NDTAYEMHLH LRLESLLSLR  600
SVSPSGHLFG GVKENRNIIS KIISLKEEED YLHAAEPTVA NYLLQNEGME HLIKLMKEKL  660
YTWLLYKAIE DGKGPSVLDA EGQGVLHLAA ALSYNWAIKP TVTAGDAIGQ LTFFSETWSR  720
EQTVAVLVSL GADPGALTDP SPEVPLGRTP ADLASVNSHK GISGFLAESS LTTYFKSLTM  780
NDAKEDSAAE IPGTKVVKTF SERIATPVSY GDMPDALSLK DSLTAVTNAT QAADRIQQML  840
RMQSFERRRI TEHDIDELGM PDERAISLIT SKSHKVGPGN GFAHTAAVQI QKKFRGWKKR  900
KEFLIIRQRI VKIQAHVRGH QVRKQYKAIT WSVGILEKVI LRWRRKGTGL RGFRPDAVAK  960
IPSPQPVPSK EDDYDFLKKG RKQTEERLQK ALTRVKSMVQ YPEGRAQYRR LLNVVEGFRE  1020
TKVSGMAVEG SEEKAEGGED LIDIDKLLDD DTFMSIAFD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037875.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009344575.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A498K4W3	0.0	A0A498K4W3_MALDO; Uncharacterized protein
STRING	XP_009344575.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]