PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037271.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 588aa    MW: 64791.1 Da    PI: 6.0355
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037271.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.41.5e-24122223199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+ltpsd+++ g +++pk +a+++        +++ +   l l+d++g +We+++iyr++++r++lt+GW++Fv+ + L +gD+vvF+  ++ ++e
  Pbr037271.1 122 FAKILTPSDAHNGGGFSVPKFCADSIfpplnyqAEPPVQ--ALFLTDLHGVVWEFRHIYRGTPRRHLLTTGWSKFVNHKMLVAGDSVVFM--RNGRGE 215
                  89*********************999****985444445..7************************************************..457899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  ++++v+r+
  Pbr037271.1 216 MFIGVRRA 223
                  99***996 PP
2Auxin_resp851.6e-28270353183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  +a+ a+++++FevvY+P+a++ +Fvvk e vekalkv +++GmR+k+a+etedss+ ++ +Gt +  s  d+  W++S+Wr+L+
  Pbr037271.1 270 VAEMAAEGKPFEVVYYPKAGWWDFVVKSEVVEKALKVFWTAGMRVKLAMETEDSSRMTWfQGTLSTASVPDNGPWQGSPWRMLQ 353
                  578899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.11E-29112241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-35117232IPR015300DNA-binding pseudobarrel domain
CDDcd100176.28E-21120218No hitNo description
PROSITE profilePS5086312.703122224IPR003340B3 DNA binding domain
PfamPF023623.3E-22122223IPR003340B3 DNA binding domain
SMARTSM010197.5E-21122224IPR003340B3 DNA binding domain
PfamPF065077.9E-26271353IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MPPPHRRSID PKIWRACAGN SVQIPTLNSR VYYFPQGHLE QSSPSSAAPI LLSPLLLSKP  60
LILCRISDLH FLPDPTTDEV FAKLLLVPIP NEFPNVKPPN GDELNADDNG GLERQDDRVF  120
SFAKILTPSD AHNGGGFSVP KFCADSIFPP LNYQAEPPVQ ALFLTDLHGV VWEFRHIYRG  180
TPRRHLLTTG WSKFVNHKML VAGDSVVFMR NGRGEMFIGV RRAVRPSASS DCARWNYHIG  240
GGPTNSMRLK TEDQDCSGRK VMSAEAVAEV AEMAAEGKPF EVVYYPKAGW WDFVVKSEVV  300
EKALKVFWTA GMRVKLAMET EDSSRMTWFQ GTLSTASVPD NGPWQGSPWR MLQVTWDEPE  360
ALHNAKRVSP WQVEFVGSTP TIQTTFCPTK RFRAPLSHGL LINAEEEFFF PMAGAANSAM  420
GPFSASLLNY NFPAGMQGAR QDTFSVSNLS HLLSENTPQA CTYNSFGNNE VPKLKRVCTE  480
LNIGSSQSDE LSPDSQSSVP SFGMELDGNR LQTKVGTSSF QLFGKIIHTN QSAEGGSDDV  540
GCTEDSGNKE YNVAEGGHNQ LDLNFTELLD RIDIKCQKTS AVDSCSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-66937451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037271.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344253.10.0PREDICTED: auxin response factor 17-like
SwissprotQ84WU61e-173ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A498HYG70.0A0A498HYG7_MALDO; Multifunctional fusion protein
STRINGXP_009344253.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-165auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]