PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr037205.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 29755.9 Da PI: 4.8229 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.1e-17 | 59 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + +Wv+e r+p + k+ r++lg++ tae+Aa+a++ a+++++g Pbr037205.1 59 PVYRGVRRRN-NDKWVCEMREP---NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 110 68*****887.8******9998...5477************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-13 | 59 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-29 | 60 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.734 | 60 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 60 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 60 | 119 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.44E-28 | 61 | 120 | No hit | No description |
PRINTS | PR00367 | 1.6E-7 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MNTISRQLSD SAERPESSSD TSVTTRSHLT SFSDEEVILA SSTPKKRAGR RVFNETRHPV 60 YRGVRRRNND KWVCEMREPN KKKSRIWLGT YPTAEMAARA HDVAALAFRG RLACLNFADS 120 DDVAALAFRG RLACLNFADS AWRLPVPAST DSVDIRRAAA EAAETFRPAE FGGVSESGDD 180 EKESKKMEGE KDCGGAEQSD CGGAEQSDCG GAEQSGSSFY LDEEEMFAMP RLLDSMAEGL 240 LLSPPRRSAG GNMNWDDMGS NDDVNLWSFS K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 58 | 117 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr037205.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC543503 | 0.0 | KC543503.1 Malus x domestica CBF/DREB 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018500259.1 | 1e-174 | PREDICTED: dehydration-responsive element-binding protein 1A-like | ||||
TrEMBL | A0A498K0A2 | 1e-163 | A0A498K0A2_MALDO; Uncharacterized protein | ||||
STRING | XP_009344260.1 | 1e-173 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-59 | C-repeat-binding factor 4 |