PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr037203.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19014 Da PI: 4.405 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.8 | 1.5e-09 | 5 | 35 | 26 | 55 |
AP2 26 g.krkrfslgkfgtaeeAakaaiaarkkleg 55 + k+ r++lg++ tae+Aa+a++ a+++++g Pbr037203.1 5 NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 35 4367************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.305 | 1 | 43 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-11 | 1 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.07E-19 | 1 | 45 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-19 | 2 | 45 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-13 | 2 | 45 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-6 | 6 | 35 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MREPNKKKSR IWLGTYPTAE MAARAHDVAA LAFRGRLACL NFADSAWRLP VPASTDSVDI 60 RRAAAEAAET FRPAEFGGVS ESGDDEKKSK KMEGEKDCGG AEQSDCGGAE QSDCGGAEQS 120 GSSFYLDEEE MFAMPRLLDS MAEGLLLSPP RRSAGGSMNW DDMGSNDDVN LWSFSK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr037203.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC543503 | 0.0 | KC543503.1 Malus x domestica CBF/DREB 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009377921.1 | 1e-126 | PREDICTED: dehydration-responsive element-binding protein 1D-like | ||||
TrEMBL | A0A0R4XC29 | 1e-113 | A0A0R4XC29_9ROSA; CBF4 | ||||
TrEMBL | A0A1Y0DCU7 | 1e-113 | A0A1Y0DCU7_MALDO; C-repeat binding factor-like 3 | ||||
TrEMBL | A0A498K0A2 | 1e-113 | A0A498K0A2_MALDO; Uncharacterized protein | ||||
TrEMBL | R4KY74 | 1e-113 | R4KY74_MALDO; CBF/DREB 4 | ||||
STRING | XP_009377921.1 | 1e-126 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 2e-38 | C-repeat/DRE binding factor 1 |