PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037186.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 701aa    MW: 77937.9 Da    PI: 6.4147
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037186.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.34.5e-1333356991374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                  lv+lLl+cAeav+++d  la+++L +l+  + p gd+mqR+a++fteAL+arla + +++ +  +p++ s+    s e l+++++ ++++P++kf+h+
  Pbr037186.1 335 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVMPLGDSMQRVASCFTEALSARLAATLTTTPSGSAPKPFSPFPpnSFEILKIYQIVYQACPYIKFAHF 432
                  68*****************************************************887777766666655433339********************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e ++etg+ L+++A +l+vpfef++ v ++ledl+++++
  Pbr037186.1 433 TANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----FIEGVKETGRCLTELALSLHVPFEFHA-VGEQLEDLKPHMF 525
                  *****************************************************....99*************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn v +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++
  Pbr037186.1 526 NRRIGEALAVNTVNRLHRVP------VNCLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 617
                  *******************9......344557****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vacegaer+erhe+lekWr+ +e+ GFk+vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Pbr037186.1 618 EIRNIVACEGAERTERHERLEKWRKVMESKGFKSVPLSANAVTQSKILLGLYSCDGYRMTEDKGCLLLGWQDRSIMAASAWR 699
                  *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.758309679IPR005202Transcription factor GRAS
PfamPF035141.5E-130335699IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MMINTLSGSM GSVKSENSFT SDLKPPSPTE STTMSMSISE CKKTTTPPSS ELDQQSSLTP  60
PSLNFPTLKF EVDDVEVQSP DHSIWDSLFS EQFDTDFMVL SPVPNNMPNS PQNGGSATHQ  120
NYNYNYAQSM QGQSLSGCSP PRFSPHLGAF SSTHNPKGKG LSPLRRVFNS PVNQYMQPAD  180
QNMQSLPVSI EDFLDDYQRD GFIAAYPTTT SSRMSGSSSQ SYNHHDHLPA SSTVPSATLD  240
CMPMHNSSRF SRSESEASLV TAGNSQLTQE SSRGSGYQQM GGAPLSQQLQ QERMQEKQQH  300
PLMQPHKHHQ HQQNLHYNMM PPMAHEQEQD GGLQLVHLLL ACAEAVAKED YMLARRYLHH  360
LNRVVMPLGD SMQRVASCFT EALSARLAAT LTTTPSGSAP KPFSPFPPNS FEILKIYQIV  420
YQACPYIKFA HFTANQAIFE AFESEERVHV IDLDILQGYQ WPAFMQALAA RPGGAPFLRI  480
TGVGPFIEGV KETGRCLTEL ALSLHVPFEF HAVGEQLEDL KPHMFNRRIG EALAVNTVNR  540
LHRVPVNCLG NLLAMIRDQA PNIVTLVEQE ASHNGPYFLG RFLEALHYYS AIFDSLDATF  600
PPDSAQRAKV EQYIFAPEIR NIVACEGAER TERHERLEKW RKVMESKGFK SVPLSANAVT  660
QSKILLGLYS CDGYRMTEDK GCLLLGWQDR SIMAASAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-9334269826378Protein SCARECROW
5b3h_A1e-9334269825377Protein SCARECROW
5b3h_D1e-9334269825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037186.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344215.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A498HIF30.0A0A498HIF3_MALDO; Uncharacterized protein
STRINGXP_009344215.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-95RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]