PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr037186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 701aa MW: 77937.9 Da PI: 6.4147 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 435.3 | 4.5e-133 | 335 | 699 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 lv+lLl+cAeav+++d la+++L +l+ + p gd+mqR+a++fteAL+arla + +++ + +p++ s+ s e l+++++ ++++P++kf+h+ Pbr037186.1 335 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVMPLGDSMQRVASCFTEALSARLAATLTTTPSGSAPKPFSPFPpnSFEILKIYQIVYQACPYIKFAHF 432 68*****************************************************887777766666655433339********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ e ++etg+ L+++A +l+vpfef++ v ++ledl+++++ Pbr037186.1 433 TANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----FIEGVKETGRCLTELALSLHVPFEFHA-VGEQLEDLKPHMF 525 *****************************************************....99*************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 + + gEalaVn v +lhr++ ++ ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ Pbr037186.1 526 NRRIGEALAVNTVNRLHRVP------VNCLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 617 *******************9......344557****************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ei+n+vacegaer+erhe+lekWr+ +e+ GFk+vpls +a++q k ll ++ dgyr+ e++g+l+lgW+dr+++++SaWr Pbr037186.1 618 EIRNIVACEGAERTERHERLEKWRKVMESKGFKSVPLSANAVTQSKILLGLYSCDGYRMTEDKGCLLLGWQDRSIMAASAWR 699 *********************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.758 | 309 | 679 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-130 | 335 | 699 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MMINTLSGSM GSVKSENSFT SDLKPPSPTE STTMSMSISE CKKTTTPPSS ELDQQSSLTP 60 PSLNFPTLKF EVDDVEVQSP DHSIWDSLFS EQFDTDFMVL SPVPNNMPNS PQNGGSATHQ 120 NYNYNYAQSM QGQSLSGCSP PRFSPHLGAF SSTHNPKGKG LSPLRRVFNS PVNQYMQPAD 180 QNMQSLPVSI EDFLDDYQRD GFIAAYPTTT SSRMSGSSSQ SYNHHDHLPA SSTVPSATLD 240 CMPMHNSSRF SRSESEASLV TAGNSQLTQE SSRGSGYQQM GGAPLSQQLQ QERMQEKQQH 300 PLMQPHKHHQ HQQNLHYNMM PPMAHEQEQD GGLQLVHLLL ACAEAVAKED YMLARRYLHH 360 LNRVVMPLGD SMQRVASCFT EALSARLAAT LTTTPSGSAP KPFSPFPPNS FEILKIYQIV 420 YQACPYIKFA HFTANQAIFE AFESEERVHV IDLDILQGYQ WPAFMQALAA RPGGAPFLRI 480 TGVGPFIEGV KETGRCLTEL ALSLHVPFEF HAVGEQLEDL KPHMFNRRIG EALAVNTVNR 540 LHRVPVNCLG NLLAMIRDQA PNIVTLVEQE ASHNGPYFLG RFLEALHYYS AIFDSLDATF 600 PPDSAQRAKV EQYIFAPEIR NIVACEGAER TERHERLEKW RKVMESKGFK SVPLSANAVT 660 QSKILLGLYS CDGYRMTEDK GCLLLGWQDR SIMAASAWRC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-93 | 342 | 698 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-93 | 342 | 698 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-93 | 342 | 698 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr037186.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009344215.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
Swissprot | G7L166 | 0.0 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | A0A498HIF3 | 0.0 | A0A498HIF3_MALDO; Uncharacterized protein | ||||
STRING | XP_009344215.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9470 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 5e-95 | RGA-like 1 |
Publications ? help Back to Top | |||
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