PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037065.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 265aa    MW: 29271 Da    PI: 4.7743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037065.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-1897146255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Pbr037065.1  97 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALTIKG 146
                  69****998.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-2297155IPR016177DNA-binding domain
PfamPF008473.4E-1297146IPR001471AP2/ERF domain
SMARTSM003807.5E-3997160IPR001471AP2/ERF domain
PROSITE profilePS5103223.89497154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3297155IPR001471AP2/ERF domain
PRINTSPR003673.2E-1098109IPR001471AP2/ERF domain
CDDcd000187.01E-3398156No hitNo description
PRINTSPR003673.2E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEEEQFNFID CEAQTTSSSY SNSTTSPSAE SPARKISERS SSSSSSNQIQ LLDGHEKATT  60
TNDDDDDDDD QISKKKAKIN NGINGDGRQQ RHPHKPTYRG VRMRQWGKWV SEIREPRKKS  120
RIWLGTFPTP EMAARAHDVA ALTIKGRSAV LNFPELAQEL PVPASALPKD IQVAAAKAAA  180
STYPTRSCRS SSLEAEAEAE TELISQAVHD SSTHDSSSTS PSNSYNDDMF FDLPDLLLDV  240
GHHSDPGFRF SVPWLDEEPE FLWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-17981541572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344189.10.0PREDICTED: ethylene-responsive transcription factor ERF039-like
RefseqXP_009344190.10.0PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9SUK83e-45ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A482LUM91e-141A0A482LUM9_9ROSA; Transcription factor ERF24
STRINGXP_009344189.10.0(Pyrus x bretschneideri)
STRINGXP_009344190.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.18e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]