PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr037064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 29271 Da PI: 4.7743 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.8e-18 | 97 | 146 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g Pbr037064.1 97 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALTIKG 146 69****998.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-22 | 97 | 155 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-12 | 97 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-39 | 97 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.894 | 97 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-32 | 97 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 98 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.01E-33 | 98 | 156 | No hit | No description |
PRINTS | PR00367 | 3.2E-10 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MEEEQFNFID CEAQTTSSSY SNSTTSPSAE SPARKISERS SSSSSSNQIQ LLDGHEKATT 60 TNDDDDDDDD QISKKKAKIN NGINGDGRQQ RHPHKPTYRG VRMRQWGKWV SEIREPRKKS 120 RIWLGTFPTP EMAARAHDVA ALTIKGRSAV LNFPELAQEL PVPASALPKD IQVAAAKAAA 180 STYPTRSCRS SSLEAEAEAE TELISQAVHD SSTHDSSSTS PSNSYNDDMF FDLPDLLLDV 240 GHHSDPGFRF SVPWLDEEPE FLWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 98 | 154 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00436 | DAP | Transfer from AT4G16750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr037064.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009344189.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Refseq | XP_009344190.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9SUK8 | 3e-45 | ERF39_ARATH; Ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | A0A482LUM9 | 1e-141 | A0A482LUM9_9ROSA; Transcription factor ERF24 | ||||
STRING | XP_009344189.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009344190.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 8e-42 | ERF family protein |
Publications ? help Back to Top | |||
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