PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037010.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 463aa MW: 50574.3 Da PI: 6.4188

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037010.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.8e-32	246	300	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerF+eav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl Pbr037010.1 246 RPRMRWTPELHERFIEAVNRLDGAEKATPKGVLKAMNVEGLTIYHVKSHLQKYRL 300 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.306	243	303	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-30	245	301	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-17	245	300	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	247	301	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-9	248	299	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-22	336	383	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MSHHGVISVP QSETTKGVTS SYCTSPSPIH EFLGSESEGR SFTASKCSSP RVSPFKRAES 60 LGSPTNMRGS PVQHSKSPFS RSSVFCTSLY QSSSSSSETS RQLGKFPFLP HPPAYGQFNS 120 AVDSKSPLLF SEDMSNQYDD EQSDDLMKDF LNLHGDASHG SFHDISCGSD TLALTEQLEL 180 QFLSDQLDIA ITDNGENPGL DEIYEIPQAS PNTAIGLTCS KGSCVTAPLV NALSSHPSPG 240 PASAHRPRMR WTPELHERFI EAVNRLDGAE KATPKGVLKA MNVEGLTIYH VKSHLQKYRL 300 ARYMPEKKED KKASNSEEKK ATSTINESDG RRKGSIHITE ALRLQIEVQK QLHEQLEVQR 360 ALQLRIEDHA KYLQKIFENQ QKAGSALLSP QVLSSLTTNS IQVSEQQPSS SSCVSLPQLA 420 ESSPLSLKHK ATDCSDSELS AGTKRPHLEE KPDEGAVENP QL*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MSHHGVISVP QSETTKGVTS SYCTSPSPIH EFLGSESEGR SFTASKCSSP RVSPFKRAES  60
LGSPTNMRGS PVQHSKSPFS RSSVFCTSLY QSSSSSSETS RQLGKFPFLP HPPAYGQFNS  120
AVDSKSPLLF SEDMSNQYDD EQSDDLMKDF LNLHGDASHG SFHDISCGSD TLALTEQLEL  180
QFLSDQLDIA ITDNGENPGL DEIYEIPQAS PNTAIGLTCS KGSCVTAPLV NALSSHPSPG  240
PASAHRPRMR WTPELHERFI EAVNRLDGAE KATPKGVLKA MNVEGLTIYH VKSHLQKYRL  300
ARYMPEKKED KKASNSEEKK ATSTINESDG RRKGSIHITE ALRLQIEVQK QLHEQLEVQR  360
ALQLRIEDHA KYLQKIFENQ QKAGSALLSP QVLSSLTTNS IQVSEQQPSS SSCVSLPQLA  420
ESSPLSLKHK ATDCSDSELS AGTKRPHLEE KPDEGAVENP QL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-26	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-26	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-26	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-26	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-26	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-26	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-26	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-26	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018500209.1	0.0	PREDICTED: myb family transcription factor PHL6-like isoform X1
Refseq	XP_018500210.1	0.0	PREDICTED: myb family transcription factor PHL6-like isoform X1
Refseq	XP_018500211.1	0.0	PREDICTED: myb family transcription factor PHL6-like isoform X1
Swissprot	Q949U2	1e-134	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A498J303	0.0	A0A498J303_MALDO; Uncharacterized protein
STRING	XP_009344021.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13469	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-121	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]