PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036992.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 109aa    MW: 12710.8 Da    PI: 10.5844
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036992.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.91.3e-081349743
                 HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 s r++ f kR+  +lKK  EL + C +++ vi  +++
  Pbr036992.1 13 SDRTIMFQKRKRRLLKKVRELTTVCCVNAVVIFRGPH 49
                 67999***************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-4158IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.713144IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-12380IPR002100Transcription factor, MADS-box
PfamPF003191.2E-91254IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MFRKKVKVAW VESDRTIMFQ KRKRRLLKKV RELTTVCCVN AVVIFRGPHD NKPTMWHSGQ  60
VTEQSRKLIE HFKPDLDLPT RSFSPHEGED EEKMMSKIGG FKNDMHGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKVAWVESDRTIMFQKRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036992.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957937.12e-36agamous-like MADS-box protein AGL80
TrEMBLA0A498JY541e-54A0A498JY54_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2276223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.12e-08AGAMOUS-like 48