PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036962.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 734aa    MW: 83338.4 Da    PI: 4.9339
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036962.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07188210527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C+++ +tG Ck+G +CkF+H++
  Pbr036962.1 188 DCSYYPKTGNCKFGWNCKFNHPR 210
                  5********************96 PP
2zf-CCCH30.18.1e-10562586226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C+++++t tCky  +CkF+H+
  Pbr036962.1 562 GEKDCSYYMQTATCKYETNCKFNHP 586
                  6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.544183211IPR000571Zinc finger, CCCH-type
SMARTSM003560.12183210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5186211IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-5188210IPR000571Zinc finger, CCCH-type
SMARTSM003560.0049560587IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.812560588IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7562586IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5564587IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.174684712IPR000571Zinc finger, CCCH-type
SMARTSM003560.002684711IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MPVPSPVPAD LVDWIRTLDP AVLNRIRNRD PALLQEIQQF DPTVEIRNLG PAFPSEFSES  60
VDVPQNPPSV PSPEPSVVEI LDSIRTLGPA MLDDIQQFDP AFLDEDRSFD PSIVDGIRKL  120
SLKEKEEKEE EEKERETEKE KENEKERESE SSSSSRGGGN ENGGEVEKKV VEESSRRNQY  180
PLRPEAGDCS YYPKTGNCKF GWNCKFNHPR RRKNKQVSKD KAKQREELEK KQDQTESKYY  240
ISPGRRIGVP SVAPALELNY SDLPIRLASK DKAKEREELE EKQDQTESKV SKDKAKQREE  300
LEERQDLTES KVSKDKAKQR EELEEKQDQT ESKVSKDKEK QREELEEKQD QTESKYYISP  360
GRHIGVPSVA PALELNFSDL PIRPVSKDKA KQREELEELE ELEGKQEQTE SKYYISPGRR  420
IGVPSVAPAL ELNFSDLPIR PVSKDKAKQR EELEGKQEQT ESKVSKDKAK QREELEEKQE  480
QTESKYYISP GRRIGVPSVA PALELNFLDL PIRPVSKDKA KQREELEEKQ EQTESKVSKD  540
KAKQREELEE LEEKQDQTES KGEKDCSYYM QTATCKYETN CKFNHPDPTA AGVSRPQSAY  600
GNGRAASLQG LPNSQGINSE TTEWNGYQAP AYLPHRSMPA PPPSVHRSMP APASPPYVMN  660
NSVTETNYCG QHAQQTQAEE FPERPGQPVC FYFTQTGDCV DKSNCQYHHP KNQTAATPSC  720
ALSDRGLPIR PVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208212PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036962.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503664.10.0PREDICTED: uncharacterized protein LOC103950070 isoform X2
TrEMBLA0A498JJL46e-77A0A498JJL4_MALDO; Uncharacterized protein
STRINGXP_009359498.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.17e-37C3H family protein