PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036949.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 301aa    MW: 34915.3 Da    PI: 8.4073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036949.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002894117123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C++C+ksF+  + L +H  + H
  Pbr036949.1  94 WQCGYCKKSFRAEMFLDQHFDNrH 117
                  58***********99999976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MHSWRRELSQ FVKAMCRACT KFESPPPTLE QEHAHEVHCS RERSRAAWQI IEKYLMPVVE  60
QEHYEIPSNC RLHPDNDLFR DQEVHKVQLD INEWQCGYCK KSFRAEMFLD QHFDNRHYNL  120
LNISGSKCLA DLCGALHCDA VMNTKSSKTK CNPAAVARNH HLCEGLANSC FPINQSPSAR  180
RLNEFFLHQF CHAHTCLGKQ KLFPRGGKVR LQSLIAVDFT IKDELCRSFN LQAYSPLQFC  240
HDCLIFDIKH SSVFYMAISI LTLMLLPIFY LIVYLHQSEM RKGTQELRRI SRVGQKTKPS  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036949.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503662.11e-166PREDICTED: uncharacterized protein LOC103950060
TrEMBLA0A498JKM41e-155A0A498JKM4_MALDO; Uncharacterized protein
STRINGXP_009359488.11e-168(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-110C2H2-like zinc finger protein