PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr036348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 663aa MW: 74200 Da PI: 6.9156 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.2 | 2.5e-29 | 61 | 144 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++ t+++fdql+ Pbr036348.1 61 RWPRQETLALLQIRSDMDVAFRDASVKGPLWEEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLN 144 8********************************************************************975544..6******97 PP | |||||||
2 | trihelix | 100.8 | 1.1e-31 | 458 | 542 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++++++++++ k+plWee+s +mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ l+ Pbr036348.1 458 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFNLLD 542 8*********************************************************************8.99********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.8E-4 | 58 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 6.9E-19 | 60 | 145 | No hit | No description |
PROSITE profile | PS50090 | 6.876 | 60 | 118 | IPR017877 | Myb-like domain |
CDD | cd12203 | 9.27E-23 | 60 | 125 | No hit | No description |
SMART | SM00717 | 0.0029 | 455 | 517 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 6.01E-28 | 457 | 522 | No hit | No description |
PROSITE profile | PS50090 | 7.05 | 457 | 515 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.6E-22 | 457 | 544 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MLGDSTSVLG SSTSRDAAAV AVAAPEGGGG DGSNNNSGEE TFRGGHEELS GGGERSFGGN 60 RWPRQETLAL LQIRSDMDVA FRDASVKGPL WEEVSRKLAA LGYHRSAKKC KEKFENVYKY 120 HRRTKEGRTG KSEGKTYRFF DQLNAFENQP PTPGSTSTTH HHQRKPHQPM AAAAATVTTT 180 AMANPPTIFH PNSSTTTTST TVPSSATPHP TITTVSSQGI ATPTLNNLTL PSSFPQTNPI 240 VLPPPPQPRP HQPTTANPTT NANQHQQQQH TGFPTSLSAI PTDIISNSTS SSTSSDEELE 300 GRAKKKRKWK EFFERLMKDV IQKQEDLQKR FLETIEKREQ ERMVREEAWR MQEMTRINRE 360 REILAQERSI TAAKDAALMS FLQRVSEQQQ NQNQHQSMPN QSQLLRLQPA PLPPPPRKPA 420 PPPPQAQPQQ TAMNIDIVPK SNNNGENDNL MMPPSSSRWP KVEVQALIKL RTSLDSKYQE 480 NGPKGPLWEE ISGAMRKLGY NRNAKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFNL 540 LDSLYRERNK FDQNNVNSTS TNNSSSQFKP ENSVPLMVRP EQQWPPQPPS PQQQDHQGLM 600 MGIDHHQNQG DDHHDQQDKE NNIGDDEEEE EDGEEEEDYD EGDGNYEIVA NKPAPVGAAT 660 AE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr036348.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ397646 | 1e-136 | JQ397646.1 Malus zumi GTL mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009343632.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A498IQS2 | 0.0 | A0A498IQS2_MALDO; Uncharacterized protein | ||||
STRING | XP_009343632.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-86 | Trihelix family protein |