PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pbr035981.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 828aa MW: 92500.5 Da PI: 4.9016

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035981.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.5e-11	584	629	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ L+el+Pk+ + +Ka++L + +eY++ Lq Pbr035981.1 584 HSIAERLRREKISDRMKSLQELVPKS-----NRTDKASMLDEIIEYVRFLQ 629 99*********************7.....59***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	3.8E-5	154	222	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	1.02E-14	158	240	No hit	No description
PROSITE profile	PS50089	9.996	163	209	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	181	190	IPR017907	Zinc finger, RING-type, conserved site
SMART	SM00647	1.2E-12	231	293	IPR002867	IBR domain
SuperFamily	SSF57850	6.36E-6	238	298	No hit	No description
Pfam	PF01485	2.3E-9	245	293	IPR002867	IBR domain
SuperFamily	SSF57850	2.3E-7	304	342	No hit	No description
SuperFamily	SSF47459	4.71E-16	577	640	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.83E-12	577	633	No hit	No description
PROSITE profile	PS50888	16.755	579	628	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-16	581	639	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	584	629	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-13	585	634	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence Send to blast
MHRINTGSSD QIEKETESIQ KPYNLCQWQP MRRRKEAKME NPLSSHSHSR INFIDIEDDT 60 FRFTPTSRNP SINPINVDDE DRDLRSITAS LLKSVPTPAE ADNFIDLSEE TLDLYDGDDE 120 LRILRFKPSK TPFGKRGKGL FSDFSVTESG QSSNSKNDPD FVCEICVEPK SGIESFRIEN 180 CSHGYCTECM VKYVDSKLQE NITSIRCPVP DCIGLLEPEY CRPILPPKVF DQWGTALCEA 240 VILGSEKFYC PYKDCSAMLI DDGKEVVRQS ACPNCWRMFC AQCKAPWHEG IECEEFLKLN 300 KDEREKEDIM LKNLAQKQQW RRCPKCRFYV EKSMGCMFMM CSSSSWSDVD AKEIPSWPCC 360 ESEQPNEALL GSVVVVDEHE NNSSPTYLTY SNSLESLVAQ DVSSILQDFE PDAQDGGKNC 420 DVQNIGMHYG VDGNMVRIPL CSIAPENVGC NSFEPLLYQG FNGDFETLSP ISQPWPLQSY 480 EGVSPAPASG MVQHKMCSFG INGDYGDYVD YGMPSDPNNL AALVTTEKGM QDVQNYPLPS 540 FPSAPRMSGL QSLPQNTSTN PVGECNGNGK PRMRARRGQA TDPHSIAERL RREKISDRMK 600 SLQELVPKSN RTDKASMLDE IIEYVRFLQL QLKELSMSKV GAAGAVVPLT TDSQAKVGNG 660 LPQLPSIGQA ADVSFDEIAL EQLVRLMESD ADKALQHLQS EGFCLVPVAL ADAISAAKES 720 SSSRPSAPVP DYWKKKETGF ADIGVVQNNS RSSSNSSSSP DRIKRERRVA VEAERKALLG 780 LRIELLEFLV ISQNLSLQKH LNLQKHLNLG TLAKWGFKFA ASNYWFW*

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence Send to blast

MHRINTGSSD QIEKETESIQ KPYNLCQWQP MRRRKEAKME NPLSSHSHSR INFIDIEDDT  60
FRFTPTSRNP SINPINVDDE DRDLRSITAS LLKSVPTPAE ADNFIDLSEE TLDLYDGDDE  120
LRILRFKPSK TPFGKRGKGL FSDFSVTESG QSSNSKNDPD FVCEICVEPK SGIESFRIEN  180
CSHGYCTECM VKYVDSKLQE NITSIRCPVP DCIGLLEPEY CRPILPPKVF DQWGTALCEA  240
VILGSEKFYC PYKDCSAMLI DDGKEVVRQS ACPNCWRMFC AQCKAPWHEG IECEEFLKLN  300
KDEREKEDIM LKNLAQKQQW RRCPKCRFYV EKSMGCMFMM CSSSSWSDVD AKEIPSWPCC  360
ESEQPNEALL GSVVVVDEHE NNSSPTYLTY SNSLESLVAQ DVSSILQDFE PDAQDGGKNC  420
DVQNIGMHYG VDGNMVRIPL CSIAPENVGC NSFEPLLYQG FNGDFETLSP ISQPWPLQSY  480
EGVSPAPASG MVQHKMCSFG INGDYGDYVD YGMPSDPNNL AALVTTEKGM QDVQNYPLPS  540
FPSAPRMSGL QSLPQNTSTN PVGECNGNGK PRMRARRGQA TDPHSIAERL RREKISDRMK  600
SLQELVPKSN RTDKASMLDE IIEYVRFLQL QLKELSMSKV GAAGAVVPLT TDSQAKVGNG  660
LPQLPSIGQA ADVSFDEIAL EQLVRLMESD ADKALQHLQS EGFCLVPVAL ADAISAAKES  720
SSSRPSAPVP DYWKKKETGF ADIGVVQNNS RSSSNSSSSP DRIKRERRVA VEAERKALLG  780
LRIELLEFLV ISQNLSLQKH LNLQKHLNLG TLAKWGFKFA ASNYWFW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035981.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009343367.1	0.0	PREDICTED: transcription factor bHLH82-like
TrEMBL	A0A498KFS5	0.0	A0A498KFS5_MALDO; Uncharacterized protein
STRING	XP_009343367.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15061	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	8e-47	LJRHL1-like 3