PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035813.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 345aa    MW: 38081.7 Da    PI: 8.1439
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035813.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.9e-18182236256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++k+q   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Pbr035813.1 182 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 236
                  678899***********************************************98 PP
2HD-ZIP_I/II126.99e-41182271191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke ++Lr +l
  Pbr035813.1 182 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQDLR-AL 271
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.4E-769148IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466896.42E-18175239IPR009057Homeodomain-like
PROSITE profilePS5007117.086178238IPR001356Homeobox domain
SMARTSM003898.0E-16180242IPR001356Homeobox domain
PfamPF000462.8E-15182236IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-17182236IPR009057Homeodomain-like
CDDcd000865.92E-16182239No hitNo description
PROSITE patternPS000270213236IPR017970Homeobox, conserved site
PfamPF021831.5E-10238272IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-25238281IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MELALSLGDA SKPFLFLDKA PKMGGNMDIG FCMGLGTAAF SAARSDESSR KSTYEVYDQE  60
ERRSRISSDP PLQLNLLPSA PVPRSHVSSQ LRFPWLTDNL AVSEPAGSSD GPGIGLDVNR  120
MPGVLASTEE AEDAAAPLSS PNSTVSSFQM DFGMRNGGRS SKRDLDVDAD RASDDEENGS  180
TRKKLRLSKD QSAFLEESFK EHSTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT  240
EVDCEYLKRC CETLTEENRR LQKELQDLRA LKTSQPFYMQ LPATTLTMCP SCERVVTTAS  300
ANTSTTTTTN HHHHIKSALN NNKPRLNPFT AAQVHIQQHQ GAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180186TRKKLRL
2230238RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035813.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369435.10.0PREDICTED: homeobox-leucine zipper protein HOX11
SwissprotP466651e-101HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A498IDI20.0A0A498IDI2_MALDO; Uncharacterized protein
STRINGXP_009369435.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-81homeobox from Arabidopsis thaliana