PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr035736.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 38090.3 Da PI: 5.0363 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 46.2 | 1.4e-14 | 9 | 153 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiy..kvePwdLpk........kvka.eekewyfFskrdkkyatgkrknratk..sg 81 p +frF+Ptd+el+ ++L+ + +++ + ++++++++++ ++eP+++ + +++a ++ +yfFs+ kk+++g++ r++ g Pbr035736.1 9 PSCFRFKPTDQELIGRFLRYFLVETPqllppPPHHTFMHKCNLFgnHSEPSEIWEafggggalQLAApDQPALYFFSELTKKTPNGSNIVRKMGrnGG 106 889*****************99988889887555567****98622679****74477888764444244588**************99996443489 PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 W + v + +++ +glk+t+ + + +++ + W+++ey+l Pbr035736.1 107 KWDGKAVPAWVEGTdgTSTCIGLKRTFCYKNVCSED--HGAWLLDEYSL 153 9*988888888776545566*********9665555..89*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-18 | 6 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.451 | 8 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-11 | 10 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEINHSLVPS CFRFKPTDQE LIGRFLRYFL VETPQLLPPP PHHTFMHKCN LFGNHSEPSE 60 IWEAFGGGGA LQLAAPDQPA LYFFSELTKK TPNGSNIVRK MGRNGGKWDG KAVPAWVEGT 120 DGTSTCIGLK RTFCYKNVCS EDHGAWLLDE YSLFAAPRNR KSHTSYDFDY VLCRLRKTSD 180 NNNRKCPRTS SSEDDQVTAS TKNSINKRKC PTSSSSEDQV TTSNKRTKKK SANEEIEGDN 240 DQELLLPADS GIAADGAVEE NVWDPSLLEK YLLETHEEEP LNPSFYKEWI AADGGVQEAY 300 HPNAYENVLD QSYYGSSYPN NACLEDQFMP PINIAQEIL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr035736.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009343318.1 | 0.0 | PREDICTED: NAC domain-containing protein 41-like | ||||
TrEMBL | A0A498KEC1 | 2e-84 | A0A498KEC1_MALDO; Uncharacterized protein | ||||
STRING | XP_009343318.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27622 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 6e-06 | NAC domain containing protein 38 |