PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035644.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 1019aa MW: 113713 Da PI: 5.6401

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035644.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	172	8.8e-54	51	166	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e ++rwlk+ e++ iL+n++k+++++ ++++p+sgsl+L+n++++r+fr+DG+ w+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+np+fqrr+y Pbr035644.2 51 QEaQARWLKPAEVLFILQNHDKYKFATVPAQQPSSGSLFLFNKRILRFFRRDGHRWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEDNPSFQRRSY 148 56599******************************************************************************************* PP CG-1 100 wlLeeelekivlvhylev 117 w+L+ ++e+ivlvhy+e+ Pbr035644.2 149 WMLDPAYEHIVLVHYRET 166 **************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.396	46	172	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.1E-74	49	167	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.6E-46	52	165	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	9.8E-10	449	536	IPR013783	Immunoglobulin-like fold
CDD	cd00102	2.04E-5	452	536	No hit	No description
SuperFamily	SSF81296	8.4E-20	452	536	IPR014756	Immunoglobulin E-set
Pfam	PF01833	2.2E-9	452	535	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	4.1E-16	645	741	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.831	647	739	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.02E-17	648	741	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.88E-13	652	738	No hit	No description
Pfam	PF12796	1.1E-8	656	740	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0013	680	709	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.274	680	712	IPR002110	Ankyrin repeat
SMART	SM00248	1500	719	748	IPR002110	Ankyrin repeat
SMART	SM00015	19	797	819	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.705	798	827	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	4.51E-7	846	904	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	2.9	852	874	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.498	853	882	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0073	855	873	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	3.0E-4	875	897	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.993	876	900	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.1E-5	878	897	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence Send to blast
MPWVLGLLMV LYVAGILSSL SFLGKSILCY ASAPSTPRKD IPGYNINDLF QEAQARWLKP 60 AEVLFILQNH DKYKFATVPA QQPSSGSLFL FNKRILRFFR RDGHRWRKKK DGRTVGEAHE 120 RLKVGNVETL NCYYAHGEDN PSFQRRSYWM LDPAYEHIVL VHYRETNEGK PSTGSFVQSP 180 VSSSFSHSPS SNTTRPGSIS IVSDLHEPYQ NLSSPGSLEV SSDIVIKENG RENPENLYGT 240 GELDSLTKLD VNQALRQLEE QLSLDEDSFK GFVDDNPNAL DILDYGDIAN QDQFNAFNGP 300 EYVVHDQFYN EPAQMQGNAD YSGEHQIDDR EIRNGNKESA TWKEFLDPHK TSSVLKSEEK 360 SLYTLDRNEN PLSSLSGPTE VQEHCQWLNS NGNIVDNYSL LLPQEVDSFK LSPYSSVTGT 420 HSDYYTQLFE QGQIGSLESD ISLTVAQNQK FTVQEISPEW GYATEATKVI IIGSFLCDPS 480 ESAWTCMFGD VEVPAQIIQE GVIRCEAPPH LPGKVTVCIT AGNRVSCSEV REFEYRVKSS 540 SYTHNNSPPQ EAAKSAEELL LLLRFVQMLT YDSSAQKRDS AGSESLRKLK ADDDSWGTII 600 ESLLLGNGSS STTIYWLLEE LLKDKLQQWL SSRSHEFDQY GCCLSKKEQG IIHMIAGLGF 660 EWALNQILNC GVNINFRDIN GWTALHWAAR FGREKMVAVL VASGASAGAV TDPSSQDPVG 720 RTAASIAAIN GHKGLAGYLS ELSLTSHLSS LTLEETELSK GSAEVEAEIT VNSISNRSLE 780 VSEDQESLKN TLAAVRNAAQ AAARIQSAFR AHSFRKRQLK EAGVSIDDYG ISSDDIAGLS 840 AFSKLSFRNP RDYNSAAVSI QKKYRGYKGR KDFLVLRQKV VKIQAHVRGY QVRKHYKVIC 900 WAVGILDKVV LRWRRKGAGL RGFRQETQTD EESEDEDILK VFRKQKVNVA IEEAVSRVLS 960 MVESPKARQQ YHRMLTRYHQ AKAELGGTSS EGFGAEADTP HSGEDDLSVD DIDMYLFP*

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence Send to blast

MPWVLGLLMV LYVAGILSSL SFLGKSILCY ASAPSTPRKD IPGYNINDLF QEAQARWLKP  60
AEVLFILQNH DKYKFATVPA QQPSSGSLFL FNKRILRFFR RDGHRWRKKK DGRTVGEAHE  120
RLKVGNVETL NCYYAHGEDN PSFQRRSYWM LDPAYEHIVL VHYRETNEGK PSTGSFVQSP  180
VSSSFSHSPS SNTTRPGSIS IVSDLHEPYQ NLSSPGSLEV SSDIVIKENG RENPENLYGT  240
GELDSLTKLD VNQALRQLEE QLSLDEDSFK GFVDDNPNAL DILDYGDIAN QDQFNAFNGP  300
EYVVHDQFYN EPAQMQGNAD YSGEHQIDDR EIRNGNKESA TWKEFLDPHK TSSVLKSEEK  360
SLYTLDRNEN PLSSLSGPTE VQEHCQWLNS NGNIVDNYSL LLPQEVDSFK LSPYSSVTGT  420
HSDYYTQLFE QGQIGSLESD ISLTVAQNQK FTVQEISPEW GYATEATKVI IIGSFLCDPS  480
ESAWTCMFGD VEVPAQIIQE GVIRCEAPPH LPGKVTVCIT AGNRVSCSEV REFEYRVKSS  540
SYTHNNSPPQ EAAKSAEELL LLLRFVQMLT YDSSAQKRDS AGSESLRKLK ADDDSWGTII  600
ESLLLGNGSS STTIYWLLEE LLKDKLQQWL SSRSHEFDQY GCCLSKKEQG IIHMIAGLGF  660
EWALNQILNC GVNINFRDIN GWTALHWAAR FGREKMVAVL VASGASAGAV TDPSSQDPVG  720
RTAASIAAIN GHKGLAGYLS ELSLTSHLSS LTLEETELSK GSAEVEAEIT VNSISNRSLE  780
VSEDQESLKN TLAAVRNAAQ AAARIQSAFR AHSFRKRQLK EAGVSIDDYG ISSDDIAGLS  840
AFSKLSFRNP RDYNSAAVSI QKKYRGYKGR KDFLVLRQKV VKIQAHVRGY QVRKHYKVIC  900
WAVGILDKVV LRWRRKGAGL RGFRQETQTD EESEDEDILK VFRKQKVNVA IEEAVSRVLS  960
MVESPKARQQ YHRMLTRYHQ AKAELGGTSS EGFGAEADTP HSGEDDLSVD DIDMYLFP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035644.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009343150.1	0.0	PREDICTED: calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A314V2T7	0.0	A0A314V2T7_PRUYE; Calmodulin-binding transcription activator 4
STRING	XP_009343149.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]