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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr035515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 401aa MW: 43453.1 Da PI: 7.9947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 118 | 163 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W+ Ia+++ gR++k+c++rw++ Pbr035515.1 118 RGHWRPAEDSKLKELVGQYGPQNWNVIAEHLD-GRSGKSCRLRWFNQ 163 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58 | 2.1e-18 | 170 | 213 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ Pbr035515.1 170 RGAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 213 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.707 | 113 | 164 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-13 | 117 | 166 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.99E-28 | 117 | 211 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-15 | 118 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-26 | 119 | 171 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.66E-13 | 121 | 162 | No hit | No description |
PROSITE profile | PS51294 | 27.18 | 165 | 219 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 169 | 217 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 170 | 212 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-21 | 172 | 217 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-7 | 181 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MAFRHLMSDC DGFTRYQDLN FLPPPPVSNQ LSLSNIFGGS TSAMGVVPFS PSSSQQTNKP 60 WSFQALENGG PNISDLGVLS GVDQKRPTPL NLNLVGEEDD DEGRSPAGGR TSAKSCVRGH 120 WRPAEDSKLK ELVGQYGPQN WNVIAEHLDG RSGKSCRLRW FNQLDPRINR GAFSEEEEER 180 LLAAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARSRR EQSHVFKRRK PSSPPPSSPL 240 PHVVANFPKN PSTSTESTVS ISTINDDSTQ SASTCTNLSL TPSNKPPPTF FSKFHPFHRP 300 QIIGSPIGSS SSSDGGFNKM IGSNGNGFCE STGPVRGVGA AAAAMKGVDN SGHQSDSENS 360 GDESVTTTRT NRSLSGEDQD LHHEKTTTIH FIDFLGVGTA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-34 | 117 | 217 | 6 | 106 | B-MYB |
1mse_C | 4e-34 | 117 | 217 | 3 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 4e-34 | 117 | 217 | 3 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr035515.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009343057.2 | 0.0 | PREDICTED: myb-like protein A | ||||
TrEMBL | A0A498IHX0 | 0.0 | A0A498IHX0_MALDO; Uncharacterized protein | ||||
STRING | XP_008386891.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 4e-65 | myb domain protein 105 |