PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 542aa MW: 60981.4 Da PI: 8.3902

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035399.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	331.7	1.3e-101	177	540	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ l+ + + + + pp++ ++ + + ++ a+k+fsevsP+l+f ++t+N Pbr035399.1 177 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPAT--SPPPRTPTPFDIIFKMGAYKVFSEVSPLLQFVNFTCN 272 679************************************************955554..57888899999********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..elee 193 qa+lea++ +++Hi+Dfdi+ G++W++++q+L R+ +++pslRiT++ sp++++ el+ ++++L++fA+e+g++f+ +v+ ++l++ +l Pbr035399.1 273 QALLEALSDTDQIHIVDFDIGFGAHWASFMQELPIRNrgASAPSLRITAFTSPSTHHPVELRLMRDNLTQFANEIGISFDLEVVNIDSLDQNsySLPI 370 ******************************99966779*************************************988877766224556 PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +r +++Ea+aVn+ + ++ +++++l++ vL++vk+lsPk+vv ++ +d+++ +F +++l+al+ y l++sl+a +s++ +k+Er+ll+ Pbr035399.1 371 FRANNNEAVAVNFPI--WSTSNQPAALPN----VLRFVKQLSPKIVVSLDRGCDRSDLPFPQHILQALQSYINLLESLDAV-NVTSDAVNKIERFLLQ 461 78888****99..666678999999....*****************************************665.579********* PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++i++ v + + ++ W+ + +aGF+pvp+s+++++qa++++++ + +g++ve++++slvl+W++r+L+s+SaWr Pbr035399.1 462 PKIESTVLGRLRT----PDKMPLWKTLFASAGFTPVPFSNFTETQAECVVKRNPARGFHVEKRQESLVLCWQRRELISASAWR 540 ***998887....9999***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.214	150	520	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.7E-99	177	540	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MHNNGGSNSV NCNIQNPIFS NSSNTLALPV SLPAVYGQQQ LSPDEKPQIL NPQLFMSNQN 60 QQPQVAQNPN FFMPLAYAQQ EQHHLLQSQP KRHNSGTNID PSTHQIQKGQ FSDPGQEFFM 120 RKQQQQQFGF AQGMQFLPQQ HRIQQKPLMV PKQKVVLGNG EEMAHHQQQQ QLQHTLLDQL 180 YKAAELVGTG NFSHAQGILA RLNHQLSPVG KPLQRAAFYF KEALQLLLLM NNPATSPPPR 240 TPTPFDIIFK MGAYKVFSEV SPLLQFVNFT CNQALLEALS DTDQIHIVDF DIGFGAHWAS 300 FMQELPIRNR GASAPSLRIT AFTSPSTHHP VELRLMRDNL TQFANEIGIS FDLEVVNIDS 360 LDQNSYSLPI FRANNNEAVA VNFPIWSTSN QPAALPNVLR FVKQLSPKIV VSLDRGCDRS 420 DLPFPQHILQ ALQSYINLLE SLDAVNVTSD AVNKIERFLL QPKIESTVLG RLRTPDKMPL 480 WKTLFASAGF TPVPFSNFTE TQAECVVKRN PARGFHVEKR QESLVLCWQR RELISASAWR 540 C*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MHNNGGSNSV NCNIQNPIFS NSSNTLALPV SLPAVYGQQQ LSPDEKPQIL NPQLFMSNQN  60
QQPQVAQNPN FFMPLAYAQQ EQHHLLQSQP KRHNSGTNID PSTHQIQKGQ FSDPGQEFFM  120
RKQQQQQFGF AQGMQFLPQQ HRIQQKPLMV PKQKVVLGNG EEMAHHQQQQ QLQHTLLDQL  180
YKAAELVGTG NFSHAQGILA RLNHQLSPVG KPLQRAAFYF KEALQLLLLM NNPATSPPPR  240
TPTPFDIIFK MGAYKVFSEV SPLLQFVNFT CNQALLEALS DTDQIHIVDF DIGFGAHWAS  300
FMQELPIRNR GASAPSLRIT AFTSPSTHHP VELRLMRDNL TQFANEIGIS FDLEVVNIDS  360
LDQNSYSLPI FRANNNEAVA VNFPIWSTSN QPAALPNVLR FVKQLSPKIV VSLDRGCDRS  420
DLPFPQHILQ ALQSYINLLE SLDAVNVTSD AVNKIERFLL QPKIESTVLG RLRTPDKMPL  480
WKTLFASAGF TPVPFSNFTE TQAECVVKRN PARGFHVEKR QESLVLCWQR RELISASAWR  540
C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-32	195	540	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035399.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009343059.1	0.0	PREDICTED: scarecrow-like protein 22
Swissprot	O81316	1e-123	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A498JTP0	0.0	A0A498JTP0_MALDO; Uncharacterized protein
STRING	XP_009343059.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-122	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]