PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035306.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 236aa    MW: 27141.3 Da    PI: 4.9049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035306.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-091460147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W +eEde+l+ +v++ Gg++W++   + g++R++ +c  r ++y
      Pbr035306.1 14 KGPWLEEEDERLKTYVNLKGGRRWDALVIESGLRRSGRSCNMRSLNY 60
                     79**************************************8777776 PP
2Myb_DNA-binding42.81.2e-1374112848
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      E++ ++++++++G++ W+ I++ ++ gRt++++k++w+++l
      Pbr035306.1  74 EEKTILQLHQRWGNK-WSMISQALP-GRTDNEIKNHWRTHL 112
                      99*************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.677960IPR017930Myb domain
SuperFamilySSF466895.74E-2211108IPR009057Homeodomain-like
SMARTSM007170.0321363IPR001005SANT/Myb domain
PfamPF002494.1E-71461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-131569IPR009057Homeodomain-like
PROSITE profilePS5129421.43662116IPR017930Myb domain
SMARTSM007172.9E-1166114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2170116IPR009057Homeodomain-like
PfamPF002495.4E-1274112IPR001005SANT/Myb domain
CDDcd001673.14E-874112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MICLAAVEGE NLLKGPWLEE EDERLKTYVN LKGGRRWDAL VIESGLRRSG RSCNMRSLNY  60
LCPNIKHGKI TIIEEKTILQ LHQRWGNKWS MISQALPGRT DNEIKNHWRT HLKKKIQIQD  120
GNFQCTLNKN QQGIFCQEGD MNEEKYDFDQ NHISVKNLFE TKVTSSDDLG LSDFAATNSP  180
YETQLSEWIS ELSSEQSGTT YNQDCNSVES DLCHLKWTPD DSDAWDCLGF LWDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-22121162105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358740.11e-176PREDICTED: myb-related protein 305-like
TrEMBLA0A498IHT61e-139A0A498IHT6_MALDO; Uncharacterized protein
STRINGXP_009358740.11e-175(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.16e-53myb domain protein 27