PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035217.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 795aa MW: 86926.7 Da PI: 6.6352

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035217.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	327.9	1.9e-100	433	793	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ +++ + ++ pp++ ++ ++ ++ a+k+fsevsP+l+f ++t+Nq Pbr035217.1 433 DQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLMNN--PATF--PPPRTRTPFDVFFKMGAYKVFSEVSPLLQFVNFTCNQ 526 79************************************************9..4444..5888888889*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeL 194 a+lea++ ++++Hi+Dfdi+ G++W++++q+L +R+ ++pslRiT+++sp++++ el ++++L++fA+e+g++fe +v+ + l++ +l + Pbr035217.1 527 ALLEALSDADQIHIVDFDIGFGAHWASFMQELPTRNrgVSAPSLRITAFASPSTHHPVELGLMRDNLTEFANEIGISFELDVVNLDYLDQNsySLPII 624 ********************************66679*************************************9777555541255667 PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++ gEa+aVn+ + ++ +++++l++ vL++vk+lsPk+vv ++ +d+++ +F +++l+al+ y l++sl+a +s++ +k+Er+ll++ Pbr035217.1 625 QTNDGEAVAVNFPI--WSTSNQPAALPN----VLRFVKQLSPKIVVSLDRGCDRSDLPFPQHILQALQSYINLLESLDAI-NVTSDAVSKIERFLLQP 715 8888****99..666678999999....*****************************************887.689********** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +i++ v + + ++ W+ + +aGF+pvp+s+++++qa++++++ + +g++ve++++sl+l+W++r+L+s+SaWr Pbr035217.1 716 KIESTVLGRLRT----PDKMPIWKTLFASAGFTPVPFSNFTETQAECVVKRNPARGFHVEKRQESLILCWQRRELISASAWR 793 **998887....999************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.248	405	773	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.6E-98	433	793	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MPFQFQQGKA VVEITTASLP AIFTDSSCSK YKDGGFFNHH HHSFPTGEPN SVLHMRRSPS 60 PPTSASTLSS SFNKGGGGGD KSTSLAAETL PAVGPASSKD EWACELQSIR SGGLEAVTGS 120 GGGVERCGLG LGGLEDWETM LSETAASPAH DQSLLRWIAG DVDDMSCGLK QLLQSGNGNH 180 HNSPIDFDGN AGLGIVDQGP NFDLIGSSGV SVPNFGFAGS GFSNGGNNGS NGKVGFVPHR 240 SGSFGLLNYK VSNVGLMYNN GGTNSVNCNI QNPIFSNSSN TVALPVSLPA VYGQQQFESS 300 PDEKPQILNP QLFMSNQTQQ PQNPSFFMPL AYAQQEQYHL LQSQPKRHNS GSNVNLSTHQ 360 IQKGQFSDPR HDIFVRHQQQ QQLGFAQGMQ FLPQQHHIQQ KPLMVPKQTV VLGNGEEMTH 420 HQQQQQLQDT VLDQLYKAAE LVGTGNFSHA QGILARLNHQ LSPVGKPLQR AAFYFKEALQ 480 LLMNNPATFP PPRTRTPFDV FFKMGAYKVF SEVSPLLQFV NFTCNQALLE ALSDADQIHI 540 VDFDIGFGAH WASFMQELPT RNRGVSAPSL RITAFASPST HHPVELGLMR DNLTEFANEI 600 GISFELDVVN LDYLDQNSYS LPIIQTNDGE AVAVNFPIWS TSNQPAALPN VLRFVKQLSP 660 KIVVSLDRGC DRSDLPFPQH ILQALQSYIN LLESLDAINV TSDAVSKIER FLLQPKIEST 720 VLGRLRTPDK MPIWKTLFAS AGFTPVPFSN FTETQAECVV KRNPARGFHV EKRQESLILC 780 WQRRELISAS AWRC*

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MPFQFQQGKA VVEITTASLP AIFTDSSCSK YKDGGFFNHH HHSFPTGEPN SVLHMRRSPS  60
PPTSASTLSS SFNKGGGGGD KSTSLAAETL PAVGPASSKD EWACELQSIR SGGLEAVTGS  120
GGGVERCGLG LGGLEDWETM LSETAASPAH DQSLLRWIAG DVDDMSCGLK QLLQSGNGNH  180
HNSPIDFDGN AGLGIVDQGP NFDLIGSSGV SVPNFGFAGS GFSNGGNNGS NGKVGFVPHR  240
SGSFGLLNYK VSNVGLMYNN GGTNSVNCNI QNPIFSNSSN TVALPVSLPA VYGQQQFESS  300
PDEKPQILNP QLFMSNQTQQ PQNPSFFMPL AYAQQEQYHL LQSQPKRHNS GSNVNLSTHQ  360
IQKGQFSDPR HDIFVRHQQQ QQLGFAQGMQ FLPQQHHIQQ KPLMVPKQTV VLGNGEEMTH  420
HQQQQQLQDT VLDQLYKAAE LVGTGNFSHA QGILARLNHQ LSPVGKPLQR AAFYFKEALQ  480
LLMNNPATFP PPRTRTPFDV FFKMGAYKVF SEVSPLLQFV NFTCNQALLE ALSDADQIHI  540
VDFDIGFGAH WASFMQELPT RNRGVSAPSL RITAFASPST HHPVELGLMR DNLTEFANEI  600
GISFELDVVN LDYLDQNSYS LPIIQTNDGE AVAVNFPIWS TSNQPAALPN VLRFVKQLSP  660
KIVVSLDRGC DRSDLPFPQH ILQALQSYIN LLESLDAINV TSDAVSKIER FLLQPKIEST  720
VLGRLRTPDK MPIWKTLFAS AGFTPVPFSN FTETQAECVV KRNPARGFHV EKRQESLILC  780
WQRRELISAS AWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-32	450	793	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035217.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009342859.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A498K152	0.0	A0A498K152_MALDO; Uncharacterized protein
STRING	XP_009342859.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-120	GRAS family protein