PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035120.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 925aa MW: 102731 Da PI: 5.2078

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035120.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.7e-30	608	665	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDg+nWrKYGq++v+gs++prsYY+Ct+++Cp+kkkvers +++++ei+Y+g+Hnh+k Pbr035120.1 608 DDGFNWRKYGQRQVEGSKYPRSYYKCTYHNCPTKKKVERSL-NGEITEIVYKGSHNHPK 665 8**************************************.*************85 PP
2	WRKY	97.1	1.2e-30	765	823	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYGqK++kg+ pr+YY+Ct++gCpv+k+vers +d + v++tYeg+Hnh+ Pbr035120.1 765 VDDGYRWRKYGQKVMKGNFLPRAYYKCTYTGCPVRKHVERSPHDSRSVITTYEGKHNHD 823 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05659	9.0E-18	4	140	IPR008808	Powdery mildew resistance protein, RPW8 domain
PROSITE profile	PS51153	14.377	185	340	IPR008808	Powdery mildew resistance protein, RPW8 domain
Pfam	PF05659	2.9E-31	196	328	IPR008808	Powdery mildew resistance protein, RPW8 domain
Gene3D	G3DSA:2.20.25.80	2.1E-25	597	666	IPR003657	WRKY domain
SuperFamily	SSF118290	1.2E-23	605	666	IPR003657	WRKY domain
SMART	SM00774	1.1E-31	607	665	IPR003657	WRKY domain
Pfam	PF03106	8.3E-24	608	664	IPR003657	WRKY domain
PROSITE profile	PS50811	22.045	608	666	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.1E-33	750	825	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-28	757	825	IPR003657	WRKY domain
PROSITE profile	PS50811	35.255	760	825	IPR003657	WRKY domain
SMART	SM00774	7.7E-35	765	824	IPR003657	WRKY domain
Pfam	PF03106	1.3E-23	766	823	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence Send to blast
MALALVGGAV VGALFGALYD VVKVAVGKTA MQYRPLLGDL KFTLDSLRPR IIQQIGDHNV 60 QLGLPNDEIE GLQRQMEEGI ELVRKLSHVG MWNCNIWCSC CNCTKPSYTD QLVELDRSLR 120 ILLEILKLQE ARDVKEALLL ARKIHDKQDE LDKKMSDLLI VQQEAGLTAQ HETTVGELSA 180 SNTQTMVQDR VEGNSVQGAA LGAAFSVLFG AVIQVKDNTR MFKRVLGYLK STLDSLKPLI 240 EEVAKCNRVL HLPKEELENF RIEMEKGVEL VVKCSKVHRW ASYKKYEYSN KLLGLDESLQ 300 RLLHILRVQL ARDVRESLVS VSNMEKVIEH IAGHDVVQND EVAGKGLCPL PEPTSTTVGL 360 DVLNVHERGD VIKEASVAAR KIVEGVKLIE GSGVLKDQNG IKGLYEVVEP PSPKVGLDVL 420 NLQGTINVEE TSDSTTNMEA GVKQIEESGV VKNQIDIAVT EPQSLRDGLE VANMQGTRDD 480 QQIQGIGAVA LQAPVSVYEL PSLNDSSFQF GLLDSMSSFE DNQQVIDWQQ QQNSLAEALN 540 FNKYFNLPTE KAGLESEIEF EPESRPGFCP DILTGIAYLR SRQHDDASEP DYIHRTQSSQ 600 HVSQLKSDDG FNWRKYGQRQ VEGSKYPRSY YKCTYHNCPT KKKVERSLNG EITEIVYKGS 660 HNHPKPQSTR QSTSRPIQGS SYGLSDQLAP KISNPKVESA KMPDDLEQNS PISNSGVQDE 720 NEPVAKEWDV GNANDQTTHT FSASGSSIVK EPRTVVQTVS EIDLVDDGYR WRKYGQKVMK 780 GNFLPRAYYK CTYTGCPVRK HVERSPHDSR SVITTYEGKH NHDVPAARYS DIYSAPKESA 840 SEYQSQSLLG GLDVLDVHAT EDAIKKTLVE SEQELLNEGN VVVQDQIAIK GYCEGIEPPL 900 FAVGLDGQGP MDVKETSDST VWRH*

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence Send to blast

MALALVGGAV VGALFGALYD VVKVAVGKTA MQYRPLLGDL KFTLDSLRPR IIQQIGDHNV  60
QLGLPNDEIE GLQRQMEEGI ELVRKLSHVG MWNCNIWCSC CNCTKPSYTD QLVELDRSLR  120
ILLEILKLQE ARDVKEALLL ARKIHDKQDE LDKKMSDLLI VQQEAGLTAQ HETTVGELSA  180
SNTQTMVQDR VEGNSVQGAA LGAAFSVLFG AVIQVKDNTR MFKRVLGYLK STLDSLKPLI  240
EEVAKCNRVL HLPKEELENF RIEMEKGVEL VVKCSKVHRW ASYKKYEYSN KLLGLDESLQ  300
RLLHILRVQL ARDVRESLVS VSNMEKVIEH IAGHDVVQND EVAGKGLCPL PEPTSTTVGL  360
DVLNVHERGD VIKEASVAAR KIVEGVKLIE GSGVLKDQNG IKGLYEVVEP PSPKVGLDVL  420
NLQGTINVEE TSDSTTNMEA GVKQIEESGV VKNQIDIAVT EPQSLRDGLE VANMQGTRDD  480
QQIQGIGAVA LQAPVSVYEL PSLNDSSFQF GLLDSMSSFE DNQQVIDWQQ QQNSLAEALN  540
FNKYFNLPTE KAGLESEIEF EPESRPGFCP DILTGIAYLR SRQHDDASEP DYIHRTQSSQ  600
HVSQLKSDDG FNWRKYGQRQ VEGSKYPRSY YKCTYHNCPT KKKVERSLNG EITEIVYKGS  660
HNHPKPQSTR QSTSRPIQGS SYGLSDQLAP KISNPKVESA KMPDDLEQNS PISNSGVQDE  720
NEPVAKEWDV GNANDQTTHT FSASGSSIVK EPRTVVQTVS EIDLVDDGYR WRKYGQKVMK  780
GNFLPRAYYK CTYTGCPVRK HVERSPHDSR SVITTYEGKH NHDVPAARYS DIYSAPKESA  840
SEYQSQSLLG GLDVLDVHAT EDAIKKTLVE SEQELLNEGN VVVQDQIAIK GYCEGIEPPL  900
FAVGLDGQGP MDVKETSDST VWRH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-32	608	826	8	78	Probable WRKY transcription factor 4
2lex_A	4e-32	608	826	8	78	Probable WRKY transcription factor 4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035120.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009358675.1	0.0	PREDICTED: uncharacterized protein LOC103949291
STRING	XP_009358675.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15083	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	2e-81	WRKY DNA-binding protein 33