PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035088.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 799aa    MW: 88612.7 Da    PI: 7.616
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035088.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.32.9e-23116216198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+kvlt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   +  ++e
  Pbr035088.1 116 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGVNRE 209
                  99****************************9543..445569************************************************..348888 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  Pbr035088.1 210 LRVGVRR 216
                  9***998 PP
2Auxin_resp99.54.7e-33242321183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++k+svG Rfkm+fe+ed++err+ Gt+vg++d++p +W +SkWrsLk
  Pbr035088.1 242 ASHALATQTLFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGIRFKMRFEGEDVPERRFPGTIVGLEDVSP-HWADSKWRSLK 321
                  689***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-40104245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-40110231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-19114216No hitNo description
SMARTSM010192.1E-22116218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547116218IPR003340B3 DNA binding domain
PfamPF023622.1E-21116216IPR003340B3 DNA binding domain
PfamPF065071.9E-30242321IPR010525Auxin response factor
PfamPF023095.6E-12531657IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-14569649No hitNo description
PROSITE profilePS5174525.774573654IPR000270PB1 domain
PfamPF035527.5E-12706789IPR005150Cellulose synthase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0030244Biological Processcellulose biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0016760Molecular Functioncellulose synthase (UDP-forming) activity
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MANREGGDLY PELWKACAGP LVDVPRVQER VLYFPQGHME QLEASTPTNQ ELNQGIPQFN  60
LPSKILCRVV NVNLLAEQET DEVYAQITLI PDANQTEPTS PDPCLTEPQR PAVHSFCKVL  120
TASDTSTHGG FSVLRKHATE CLPPLDMTQA TPTQELVAKD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLSAGDSF VFLRGVNREL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA  240
TASHALATQT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GIRFKMRFEG EDVPERRFPG  300
TIVGLEDVSP HWADSKWRSL KVHWDESASI PRPDKVSPWE IEPFVASVPP SLPQPAVVKN  360
KRPRPPTEIP ALDAMSSTAS AIWNSGLSQS HDKSPLSVSA EGKRSESHAG WQPQQADVIS  420
NNSVPRTQTD VGWFSSQAGG SPHMFQETME DSKSVSAWPV FSGYSTPNSS KLKNDSMFDH  480
VEKEKKTETA TSCRIFGIDF TNHSTSSLAM EKVPPQPISG STGTPEGRVS NMLAAESDQK  540
SDLSKTSKEG KPGQLQVSPK ETQSKHGCFT STRSRTKVQM QGIAVGRAVD LTTLEGYDQL  600
IDELEEMFDI KGQIRHSNMW QIVFTDNEGD MMLMGDDPWS EFCDMVKRIF ICSSQDVKKI  660
SAGCKLPMSS QEVEGGPLRV SATITNAPID CSVRDGSLYA VILMGQHFMG ISFPIKLLDM  720
LNQNKRWAMG LLEVAFSKYS PIAFGKQDMG LLKGLAYAYS GLWPIWSIPI TIYAFLPTTS  780
SSQRNYHLSK VQINKLMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-167934419355Auxin response factor 1
4ldw_A1e-167934419355Auxin response factor 1
4ldw_B1e-167934419355Auxin response factor 1
4ldx_A1e-167934419355Auxin response factor 1
4ldx_B1e-167934419355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360364KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035088.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358638.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A498JR980.0A0A498JR98_MALDO; Auxin response factor
STRINGXP_009358638.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9