PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr034610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 26902.6 Da PI: 6.5304 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.9 | 2e-21 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i n+ qvtfskRrng++KKA+EL++LC+ae+a+++fs+ k++ + Pbr034610.1 15 KITNEASLQVTFSKRRNGLFKKASELCTLCGAEIALMVFSPGKKVFSF 62 58899999*********************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.862 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-29 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.02E-26 | 7 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.85E-34 | 7 | 75 | No hit | No description |
PRINTS | PR00404 | 8.9E-18 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-24 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-18 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-18 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MARTSRGRQR VPMTKITNEA SLQVTFSKRR NGLFKKASEL CTLCGAEIAL MVFSPGKKVF 60 SFGHPCFETL IDRFEGRLSL AQLTMGHDMQ QMLEAYRSVS LNVLSQDLTK VMVLVDNEKK 120 LGVNISQTMK ESMSENWWER PLEEIETDRL EFLKTYMEEL GCKVNETRGK MLLPQVFETA 180 NDNNNFFVGS SSSNTAAGPY DQMMQTYANQ PSSSTGGGLN ENTSTWPFSA WNPSLGGGFL 240 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr034610.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009358240.1 | 1e-180 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A498JVU7 | 1e-173 | A0A498JVU7_MALDO; Uncharacterized protein | ||||
STRING | XP_009358240.1 | 1e-179 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22866 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-45 | AGAMOUS-like 62 |